(Q35053366)

6 August 2017

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title

Molecular modeling of ion channels: structural predictions (English)

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6 August 2017

Alejandro Giorgetti

1

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6 August 2017

Paolo Carloni

series ordinal

2

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6 August 2017

publication date

1 February 2003

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Current Opinion in Chemical Biology

6 August 2017

published in

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6 August 2017

volume

7

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6 August 2017

issue

1

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6 August 2017

page(s)

150-156

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A decade of CLC chloride channels: structure, mechanism, and many unsettled questions.

6 August 2017

cites work

1 reference

https://api.crossref.org/works/10.1016%2FS1367-5931%2802%2900012-1

7 January 2021

The Structure of the Potassium Channel: Molecular Basis of K+ Conduction and Selectivity

1 reference

https://api.crossref.org/works/10.1016%2FS1367-5931%2802%2900012-1

7 January 2021

Chemistry of ion coordination and hydration revealed by a K+ channel-Fab complex at 2.0 A resolution

1 reference

https://api.crossref.org/works/10.1016%2FS1367-5931%2802%2900012-1

7 January 2021

Structure of the MscL homolog from Mycobacterium tuberculosis: a gated mechanosensitive ion channel

1 reference

https://api.crossref.org/works/10.1016%2FS1367-5931%2802%2900012-1

7 January 2021

Crystal structure of Escherichia coli MscS, a voltage-modulated and mechanosensitive channel

1 reference

https://api.crossref.org/works/10.1016%2FS1367-5931%2802%2900012-1

7 January 2021

The open pore conformation of potassium channels

1 reference

https://api.crossref.org/works/10.1016%2FS1367-5931%2802%2900012-1

7 January 2021

Review: protein secondary structure prediction continues to rise.

1 reference

https://api.crossref.org/works/10.1016%2FS1367-5931%2802%2900012-1

7 January 2021

β-Sheet topology and the relatedness of proteins

1 reference

https://api.crossref.org/works/10.1016%2FS1367-5931%2802%2900012-1

7 January 2021

Two possible conducting states of the influenza A virus M2 ion channel

1 reference

https://api.crossref.org/works/10.1016%2FS1367-5931%2802%2900012-1

7 January 2021

Setting up and optimization of membrane protein simulations.

1 reference

https://api.crossref.org/works/10.1016%2FS1367-5931%2802%2900012-1

7 January 2021

Structural conservation in prokaryotic and eukaryotic potassium channels

1 reference

https://api.crossref.org/works/10.1016%2FS1367-5931%2802%2900012-1

7 January 2021

KcsA: it's a potassium channel

1 reference

https://api.crossref.org/works/10.1016%2FS1367-5931%2802%2900012-1

7 January 2021

Ion conduction pore is conserved among potassium channels

1 reference

https://api.crossref.org/works/10.1016%2FS1367-5931%2802%2900012-1

7 January 2021

Electrostatics studies and molecular dynamics simulations of a homology model of the Shaker K+ channel pore.

1 reference

https://api.crossref.org/works/10.1016%2FS1367-5931%2802%2900012-1

7 January 2021

Sequence of a probable potassium channel component encoded at Shaker locus of Drosophila

1 reference

https://api.crossref.org/works/10.1016%2FS1367-5931%2802%2900012-1

7 January 2021

Molecular simulation of the interaction of kappa-conotoxin-PVIIA with the Shaker potassium channel pore.

1 reference

https://api.crossref.org/works/10.1016%2FS1367-5931%2802%2900012-1

7 January 2021

Molecular surface recognition: determination of geometric fit between proteins and their ligands by correlation techniques

1 reference

https://api.crossref.org/works/10.1016%2FS1367-5931%2802%2900012-1

7 January 2021

A marine snail neurotoxin shares with scorpion toxins a convergent mechanism of blockade on the pore of voltage-gated K channels

1 reference

https://api.crossref.org/works/10.1016%2FS1367-5931%2802%2900012-1

7 January 2021

The block of Shaker K+ channels by kappa-conotoxin PVIIA is state dependent

1 reference

https://api.crossref.org/works/10.1016%2FS1367-5931%2802%2900012-1

7 January 2021

Single amino acid substitutions in kappa-conotoxin PVIIA disrupt interaction with the shaker K+ channel

1 reference

https://api.crossref.org/works/10.1016%2FS1367-5931%2802%2900012-1

7 January 2021

Structure-guided transformation of charybdotoxin yields an analog that selectively targets Ca(2+)-activated over voltage-gated K(+) channels.

1 reference

https://api.crossref.org/works/10.1016%2FS1367-5931%2802%2900012-1

7 January 2021

Ion channels in the immune system as targets for immunosuppression

1 reference

https://api.crossref.org/works/10.1016%2FS1367-5931%2802%2900012-1

7 January 2021

Structural differences of bacterial and mammalian K+ channels

1 reference

https://api.crossref.org/works/10.1016%2FS1367-5931%2802%2900012-1

7 January 2021

The inward rectifier potassium channel family.

1 reference

https://api.crossref.org/works/10.1016%2FS1367-5931%2802%2900012-1

7 January 2021

Inwardly rectifying potassium channels.

1 reference

https://api.crossref.org/works/10.1016%2FS1367-5931%2802%2900012-1

7 January 2021

Residues beyond the selectivity filter of the K+ channel kir2.1 regulate permeation and block by external Rb+ and Cs+

1 reference

https://api.crossref.org/works/10.1016%2FS1367-5931%2802%2900012-1

7 January 2021

Rubidium block and rubidium permeability of the inward rectifier of frog skeletal muscle fibres

1 reference

https://api.crossref.org/works/10.1016%2FS1367-5931%2802%2900012-1

7 January 2021

Potassium current and the effect of cesium on this current during anomalous rectification of the egg cell membrane of a starfish

1 reference

https://api.crossref.org/works/10.1016%2FS1367-5931%2802%2900012-1

7 January 2021

Homology modeling and molecular dynamics simulation studies of an inward rectifier potassium channel

1 reference

https://api.crossref.org/works/10.1016%2FS1367-5931%2802%2900012-1

7 January 2021

Simulations of ion permeation through a potassium channel: molecular dynamics of KcsA in a phospholipid bilayer

1 reference

https://api.crossref.org/works/10.1016%2FS1367-5931%2802%2900012-1

7 January 2021

Endothelium-dependent hyperpolarization and intercellular electrical coupling in guinea-pig mesenteric arterioles

1 reference

https://api.crossref.org/works/10.1016%2FS1367-5931%2802%2900012-1

7 January 2021

Rod and cone photoreceptor cells express distinct genes for cGMP-gated channels.

1 reference

https://api.crossref.org/works/10.1016%2FS1367-5931%2802%2900012-1

7 January 2021

A cyclic nucleotide-gated conductance in olfactory receptor cilia

1 reference

https://api.crossref.org/works/10.1016%2FS1367-5931%2802%2900012-1

7 January 2021

A family of hyperpolarization-activated mammalian cation channels

1 reference

https://api.crossref.org/works/10.1016%2FS1367-5931%2802%2900012-1

7 January 2021

Monovalent selectivity of the cyclic guanosine monophosphate-activated ion channel

1 reference

https://api.crossref.org/works/10.1016%2FS1367-5931%2802%2900012-1

7 January 2021

The multi-ion nature of the cGMP-gated channel from vertebrate rods.

1 reference

https://api.crossref.org/works/10.1016%2FS1367-5931%2802%2900012-1

7 January 2021

Cyclic nucleotide-gated channels. Pore topology studied through the accessibility of reporter cysteines

1 reference

https://api.crossref.org/works/10.1016%2FS1367-5931%2802%2900012-1

7 January 2021

Pore topology of the hyperpolarization-activated cyclic nucleotide-gated channel from sea urchin sperm

1 reference

https://api.crossref.org/works/10.1016%2FS1367-5931%2802%2900012-1

7 January 2021

Molecular modeling studies on CNG channel from bovine retinal rod: a structural model of the cyclic nucleotide-binding domain

1 reference

https://api.crossref.org/works/10.1016%2FS1367-5931%2802%2900012-1

7 January 2021

Structure of a complex of catabolite gene activator protein and cyclic AMP refined at 2.5 A resolution

1 reference

https://api.crossref.org/works/10.1016%2FS1367-5931%2802%2900012-1

7 January 2021

Molecular rearrangements in the ligand-binding domain of cyclic nucleotide-gated channels

1 reference

https://api.crossref.org/works/10.1016%2FS1367-5931%2802%2900012-1

7 January 2021

A quantitative description of membrane current and its application to conduction and excitation in nerve

1 reference

https://api.crossref.org/works/10.1016%2FS1367-5931%2802%2900012-1

7 January 2021

Determination of the subunit stoichiometry of a voltage-activated potassium channel

1 reference

https://api.crossref.org/works/10.1016%2FS1367-5931%2802%2900012-1

7 January 2021

Cellular and molecular biology of voltage-gated sodium channels

1 reference

https://api.crossref.org/works/10.1016%2FS1367-5931%2802%2900012-1

7 January 2021

A cluster of hydrophobic amino acid residues required for fast Na(+)-channel inactivation

1 reference

https://api.crossref.org/works/10.1016%2FS1367-5931%2802%2900012-1

7 January 2021

Structural parts involved in activation and inactivation of the sodium channel

1 reference

https://api.crossref.org/works/10.1016%2FS1367-5931%2802%2900012-1

7 January 2021

From ionic currents to molecular mechanisms: the structure and function of voltage-gated sodium channels

1 reference

https://api.crossref.org/works/10.1016%2FS1367-5931%2802%2900012-1

7 January 2021

Pursuing the structure and function of voltage-gated channels

1 reference

https://api.crossref.org/works/10.1016%2FS1367-5931%2802%2900012-1

7 January 2021

KcsA crystal structure as framework for a molecular model of the Na(+) channel pore

1 reference

https://api.crossref.org/works/10.1016%2FS1367-5931%2802%2900012-1

7 January 2021

On the structural basis for ionic selectivity among Na+, K+, and Ca2+ in the voltage-gated sodium channel

1 reference

https://api.crossref.org/works/10.1016%2FS1367-5931%2802%2900012-1

7 January 2021

On the structural basis for size-selective permeation of organic cations through the voltage-gated sodium channel. Effect of alanine mutations at the DEKA locus on selectivity, inhibition by Ca2+ and H+, and molecular sieving

1 reference

https://api.crossref.org/works/10.1016%2FS1367-5931%2802%2900012-1

7 January 2021

Mapping the site of block by tetrodotoxin and saxitoxin of sodium channel II.

1 reference

https://api.crossref.org/works/10.1016%2FS1367-5931%2802%2900012-1

7 January 2021

A structural model of the tetrodotoxin and saxitoxin binding site of the Na+ channel

1 reference

https://api.crossref.org/works/10.1016%2FS1367-5931%2802%2900012-1

7 January 2021

Differences in saxitoxin and tetrodotoxin binding revealed by mutagenesis of the Na+ channel outer vestibule.

1 reference

https://api.crossref.org/works/10.1016%2FS1367-5931%2802%2900012-1

7 January 2021

Specific neosaxitoxin interactions with the Na+ channel outer vestibule determined by mutant cycle analysis.

1 reference

https://api.crossref.org/works/10.1016%2FS1367-5931%2802%2900012-1

7 January 2021

Molecular modeling and dynamics of the sodium channel inactivation gate

1 reference

https://api.crossref.org/works/10.1016%2FS1367-5931%2802%2900012-1

7 January 2021

Solution structure of the sodium channel inactivation gate

1 reference

https://api.crossref.org/works/10.1016%2FS1367-5931%2802%2900012-1

7 January 2021

CHARMM: A program for macromolecular energy, minimization, and dynamics calculations

1 reference

https://api.crossref.org/works/10.1016%2FS1367-5931%2802%2900012-1

7 January 2021

Membrane protein structure prediction. Hydrophobicity analysis and the positive-inside rule

1 reference

https://api.crossref.org/works/10.1016%2FS1367-5931%2802%2900012-1

7 January 2021

Prediction of transmembrane segments in proteins utilising multiple sequence alignments

1 reference

https://api.crossref.org/works/10.1016%2FS1367-5931%2802%2900012-1

7 January 2021

Prediction of membrane protein topology utilizing multiple sequence alignments.

1 reference

https://api.crossref.org/works/10.1016%2FS1367-5931%2802%2900012-1

7 January 2021

Prediction of transmembrane alpha-helices in prokaryotic membrane proteins: the dense alignment surface method

1 reference

https://api.crossref.org/works/10.1016%2FS1367-5931%2802%2900012-1

7 January 2021

Transmembrane helices predicted at 95% accuracy

1 reference

https://api.crossref.org/works/10.1016%2FS1367-5931%2802%2900012-1

7 January 2021

Prediction of protein backbone conformation based on seven structure assignments. Influence of local interactions

1 reference

https://api.crossref.org/works/10.1016%2FS1367-5931%2802%2900012-1

7 January 2021

10.1016/S1367-5931(02)00012-1

Identifiers

DOI

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6 August 2017

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