(Q35057405)

6 August 2017

title

Altered DNA conformations in the gene regulatory region of torsionally-stressed SV40 DNA (English)

1 reference

6 August 2017

L Iacono-Connors

1

1 reference

6 August 2017

D Kowalski

series ordinal

2

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6 August 2017

language of work or name

English

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publication date

1 November 1986

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6 August 2017

published in

Nucleic Acids Research

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6 August 2017

volume

14

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6 August 2017

issue

22

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6 August 2017

page(s)

8949-8962

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Slow cruciform transitions in palindromic DNA.

6 August 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=311922

Elastic torsional strain in DNA within a fraction of SV40 minichromosomes: relation to transcriptionally active chromatin

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=311922

DNA stem-loop structures bind poorly to histone octamer cores

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=311922

Detection of an altered DNA conformation at specific sites in chromatin and supercoiled DNA

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=311922

Structural perturbation in supercoiled DNA: hypersensitivity to modification by a single-strand-selective chemical reagent conferred by inverted repeat sequences

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=311922

A dominant role for DNA secondary structure in forming hypersensitive structures in chromatin

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=311922

The inverted repeat as a recognizable structural feature in supercoiled DNA molecules

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=311922

S1-hypersensitive sites in eukaryotic promoter regions

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=311922

Mung bean nuclease cleavage of a dA + dT-rich sequence or an inverted repeat sequence in supercoiled PM2 DNA depends on ionic environment

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=311922

Changes in site specificity of single-strand-specific endonucleases on supercoiled PM2 DNA with temperature and ionic environment

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=311922

Cleavage of circular, superhelical simian virus 40 DNA to a linear duplex by S1 nuclease

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=311922

Selective extraction of polyoma DNA from infected mouse cell cultures

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=311922

Transition of a cloned d(AT)n-d(AT)n tract to a cruciform in vivo.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=311922

The kinetic properties of cruciform extrusion are determined by DNA base-sequence

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=311922

Diethyl pyrocarbonate: a chemical probe for secondary structure in negatively supercoiled DNA.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=311922

Structure- and sequence-specificity of ozone degradation of supercoiled plasmid DNA.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=311922

Altered DNA conformations detected by mung bean nuclease occur in promoter and terminator regions of supercoiled pBR322 DNA.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=311922

Novobiocin blocks the Drosophila heat shock response.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=311922

DNAaseI-hypersensitive minichromosomes of SV40 possess an elastic torsional strain in DNA.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=311922

Thermodynamic properties of superhelical DNAs

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=311922

RNA - ligand interactions:(I) magnesium binding sites in yeast tRNAPhe

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=311922

A crystallographic study of metal-binding to yeast phenylalanine transfer RNA

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=311922

A new method for sequencing DNA

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=311922

Comparison of partial denaturation maps with the known sequence of simian virus 40 and phi X174 replicative form DNA.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=311922

Dye titrations of covalently closed supercoiled DNA analyzed by agarose gel electrophoresis

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=311922

Mung bean nuclease I. 6. Physical, chemical, and catalytic properties

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=311922

Cruciform-resolvase interactions in supercoiled DNA.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=311922

Negatively supercoiled simian virus 40 DNA contains Z-DNA segments within transcriptional enhancer sequences

25 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=311922

Facile cruciform formation by an (A-T)34 sequence from a Xenopus globin gene

25 October 2018

1 reference

12 December 2020

35 Purification and properties of venom phosphodiesterase

1 reference

12 December 2020

Torsional tension in the DNA double helix measured with trimethylpsoralen in living E. coli cells: analogous measurements in insect and human cells

1 reference

12 December 2020

Cruciform structures in supercoiled DNA

1 reference

12 December 2020

Action of mung bean nuclease on supercoiled PM2 DNA

1 reference

12 December 2020

An altered DNA conformation detected by S1 nuclease occurs at specific regions in active chick globin chromatin

1 reference

12 December 2020

Structure and function of the promoter-enhancer region of polyoma and SV40

1 reference

12 December 2020

Effects of salts, temperature, and stem length on supercoil-induced formation of cruciforms

1 reference

12 December 2020

Cruciform formation in a negatively supercoiled DNA may be kinetically forbidden under physiological conditions

1 reference

12 December 2020

Evidence of cruciform structures in superhelical DNA provided by two‐dimensional gel electrophoresis

1 reference

12 December 2020

S1 nuclease recognizes DNA conformational junctions between left-handed helical (dT-dG n. dC-dA)n and contiguous right-handed sequences

1 reference

12 December 2020

Chromatin assembly in Xenopus oocytes: In vivo studies

1 reference

12 December 2020

A structural basis for S1 nuclease sensitivity of double-stranded DNA

1 reference

12 December 2020

Identifiers

DOI

10.1093/NAR/14.22.8949

1 reference

6 August 2017

1 reference

6 August 2017

1 reference