(Q35070515)

English

Modulation of functionally significant conformational equilibria in adenylate kinase by high concentrations of trimethylamine oxide attributed to volume exclusion

scientific article

In more languages

Statements

scholarly article

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21689533%20AND%20SRC:MED&resulttype=core&format=json

5 February 2020

Modulation of functionally significant conformational equilibria in adenylate kinase by high concentrations of trimethylamine oxide attributed to volume exclusion (English)

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21689533%20AND%20SRC:MED&resulttype=core&format=json

5 February 2020

5

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21689533%20AND%20SRC:MED&resulttype=core&format=json

5 February 2020

author name string

Sureshbabu Nagarajan

1

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21689533%20AND%20SRC:MED&resulttype=core&format=json

5 February 2020

Dan Amir

2

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21689533%20AND%20SRC:MED&resulttype=core&format=json

5 February 2020

Asaf Grupi

3

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21689533%20AND%20SRC:MED&resulttype=core&format=json

5 February 2020

David P Goldenberg

4

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21689533%20AND%20SRC:MED&resulttype=core&format=json

5 February 2020

Elisha Haas

6

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21689533%20AND%20SRC:MED&resulttype=core&format=json

5 February 2020

language of work or name

0 references

publication date

1 June 2011

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21689533%20AND%20SRC:MED&resulttype=core&format=json

5 February 2020

Biophysical Journal

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21689533%20AND%20SRC:MED&resulttype=core&format=json

5 February 2020

100

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21689533%20AND%20SRC:MED&resulttype=core&format=json

5 February 2020

12

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21689533%20AND%20SRC:MED&resulttype=core&format=json

5 February 2020

2991-2999

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21689533%20AND%20SRC:MED&resulttype=core&format=json

5 February 2020

Structure, function, and folding of phosphoglycerate kinase are strongly perturbed by macromolecular crowding

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3123985

8 July 2018

Effects of macromolecular crowding on protein conformational changes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3123985

8 July 2018

Extracting rate coefficients from single-molecule photon trajectories and FRET efficiency histograms for a fast-folding protein.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3123985

8 July 2018

Folding, stability and shape of proteins in crowded environments: experimental and computational approaches

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3123985

8 July 2018

Macromolecular crowding and confinement: biochemical, biophysical, and potential physiological consequences

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3123985

8 July 2018

A hierarchy of timescales in protein dynamics is linked to enzyme catalysis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3123985

8 July 2018

Intrinsic motions along an enzymatic reaction trajectory

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3123985

8 July 2018

Illuminating the mechanistic roles of enzyme conformational dynamics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3123985

8 July 2018

Single-molecule fluorescence studies of protein folding and conformational dynamics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3123985

8 July 2018

Protein folding by the effects of macromolecular crowding

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3123985

8 July 2018

Macromolecular crowding: qualitative and semiquantitative successes, quantitative challenges.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3123985

8 July 2018

Macromolecular crowding: obvious but underappreciated

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3123985

8 July 2018

The osmophobic effect: natural selection of a thermodynamic force in protein folding

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3123985

8 July 2018

Design consideration and probes for fluorescence resonance energy transfer studies.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3123985

8 July 2018

Effect of a concentrated "inert" macromolecular cosolute on the stability of a globular protein with respect to denaturation by heat and by chaotropes: a statistical-thermodynamic model

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3123985

8 July 2018

A naturally occurring protective system in urea-rich cells: mechanism of osmolyte protection of proteins against urea denaturation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3123985

8 July 2018

Towards a mechanism of AMP-substrate inhibition in adenylate kinase from Escherichia coli.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3123985

8 July 2018

Domain closure in adenylate kinase.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3123985

8 July 2018

Comparative protein modelling by satisfaction of spatial restraints

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3123985

8 July 2018

The refined structures of a stabilized mutant and of wild-type pyruvate oxidase from Lactobacillus plantarum

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3123985

8 July 2018

The closed conformation of a highly flexible protein: the structure of E. coli adenylate kinase with bound AMP and AMPPNP

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3123985

8 July 2018

Macromolecular crowding: biochemical, biophysical, and physiological consequences

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3123985

8 July 2018

Crystallographic refinement and atomic models of two different forms of citrate synthase at 2.7 and 1.7 A resolution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3123985

8 July 2018

Structure of a triclinic ternary complex of horse liver alcohol dehydrogenase at 2.9 A resolution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3123985

8 July 2018

The effect of volume occupancy upon the thermodynamic activity of proteins: some biochemical consequences

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3123985

8 July 2018

Structural and Functional Aspects of Domain Motions in Proteins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3123985

8 July 2018

Crystal structure of the binary complex of pig muscle phosphoglycerate kinase and its substrate 3-phospho-D-glycerate

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3123985

8 July 2018

Effect of the orientation of donor and acceptor on the probability of energy transfer involving electronic transitions of mixed polarization

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3123985

8 July 2018

Inter-domain mobility in proteins and its probable functional role

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3123985

8 July 2018

Sequence, structure and activity of phosphoglycerate kinase: a possible hinge-bending enzyme

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3123985

8 July 2018

Substrate binding closes the cleft between the domains of yeast phosphoglycerate kinase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3123985

8 July 2018

Yeast hexokinase in solution exhibits a large conformational change upon binding glucose or glucose 6-phosphate

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3123985

8 July 2018

Glucose-induced conformational change in yeast hexokinase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3123985

8 July 2018

Binding Energy, Specificity, and Enzymic Catalysis: The Circe Effect

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3123985

8 July 2018

Factors defining effects of macromolecular crowding on protein stability: an in vitro/in silico case study using cytochrome c.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3123985

27 September 2018

Time-resolved fluorescence resonance energy transfer study shows a compact denatured state of the B domain of protein A.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3123985

27 September 2018

Distribution analysis for single molecule FRET measurement.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3123985

27 September 2018

Linkage between dynamics and catalysis in a thermophilic-mesophilic enzyme pair

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3123985

27 September 2018

Molecular crowding: analysis of effects of high concentrations of inert cosolutes on biochemical equilibria and rates in terms of volume exclusion.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3123985

27 September 2018

Effect of dextran on protein stability and conformation attributed to macromolecular crowding

1 reference

https://pubmed.ncbi.nlm.nih.gov/21689533

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Functional significance of flexibility in proteins

1 reference

https://pubmed.ncbi.nlm.nih.gov/21689533

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Structural relationships in the adenylate kinase family

1 reference

https://pubmed.ncbi.nlm.nih.gov/21689533

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Distance distributions in proteins recovered by using frequency-domain fluorometry. Applications to troponin I and its complex with troponin C

1 reference

https://pubmed.ncbi.nlm.nih.gov/21689533

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Correlation between enzyme activity and hinge-bending domain displacement in 3-phosphoglycerate kinase

1 reference

https://pubmed.ncbi.nlm.nih.gov/21689533

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Evaluation of uncertainties for parameters in binding studies: the sum-of-squares profile and Monte Carlo estimation

1 reference

https://pubmed.ncbi.nlm.nih.gov/21689533

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Mechanisms of enzyme catalysis from crystal structure analyses

1 reference

https://pubmed.ncbi.nlm.nih.gov/21689533

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Enzyme flexibility and enzyme action

1 reference

https://pubmed.ncbi.nlm.nih.gov/21689533

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Structural invariants in protein folding

1 reference

https://pubmed.ncbi.nlm.nih.gov/21689533

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1016/J.BPJ.2011.03.065

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21689533%20AND%20SRC:MED&resulttype=core&format=json

5 February 2020

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21689533%20AND%20SRC:MED&resulttype=core&format=json

5 February 2020

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21689533%20AND%20SRC:MED&resulttype=core&format=json

5 February 2020

ResearchGate publication ID

0 references

Sitelinks

Wikipedia(0 entries)

Wikibooks(0 entries)

Wikinews(0 entries)

Wikiquote(0 entries)

Wikisource(0 entries)

Wikiversity(0 entries)

Wikivoyage(0 entries)

Wiktionary(0 entries)

Multilingual sites(0 entries)

Retrieved from "https://www.wikidata.org/w/index.php?title=Q35070515&oldid=1409882888"