(Q35074539)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24364868%20AND%20SRC:MED&resulttype=core&format=json

3 March 2020

title

Comparison of the Legionella pneumophila population structure as determined by sequence-based typing and whole genome sequencing (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24364868%20AND%20SRC:MED&resulttype=core&format=json

3 March 2020

main subject

Legionella pneumophila

1 reference

1 reference

whole genome sequencing

1 reference

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24364868%20AND%20SRC:MED&resulttype=core&format=json

3 March 2020

Massimo Mentasti

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24364868%20AND%20SRC:MED&resulttype=core&format=json

3 March 2020

Norman K Fry

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24364868%20AND%20SRC:MED&resulttype=core&format=json

3 March 2020

author name string

Anthony P Underwood

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24364868%20AND%20SRC:MED&resulttype=core&format=json

3 March 2020

Timothy G Harrison

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24364868%20AND%20SRC:MED&resulttype=core&format=json

3 March 2020

publication date

24 December 2013

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24364868%20AND%20SRC:MED&resulttype=core&format=json

3 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24364868%20AND%20SRC:MED&resulttype=core&format=json

3 March 2020

volume

13

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24364868%20AND%20SRC:MED&resulttype=core&format=json

3 March 2020

page(s)

302

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24364868%20AND%20SRC:MED&resulttype=core&format=json

describes a project that uses

3 March 2020

SQL

1 reference

26 June 2022

https://europepmc.org/article/PMC/PMC3877988

based on heuristic

inferred from PubMed Central ID database lookup

exact match

https://scigraph.springernature.com/pub.10.1186/1471-2180-13-302

0 references

cites work

A pilot study of rapid whole-genome sequencing for the investigation of a Legionella outbreak

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3877988

Sequence-based typing of Legionella pneumophila serogroup 1 clinical isolates from Belgium between 2000 and 2010.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3877988

Extensive recombination events and horizontal gene transfer shaped the Legionella pneumophila genomes

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3877988

BLAST Ring Image Generator (BRIG): simple prokaryote genome comparisons

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3877988

MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3877988

Scaffolding pre-assembled contigs using SSPACE

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3877988

Legionella pneumophila strain 130b possesses a unique combination of type IV secretion systems and novel Dot/Icm secretion system effector proteins

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3877988

RDP3: a flexible and fast computer program for analyzing recombination

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3877988

BioRuby: bioinformatics software for the Ruby programming language

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3877988

DendroPy: a Python library for phylogenetic computing

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3877988

Legionella pneumophila pangenome reveals strain-specific virulence factors.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3877988

FastTree 2--approximately maximum-likelihood trees for large alignments

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3877988

Phylogeographic reconstruction of a bacterial species with high levels of lateral gene transfer

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3877988

Identifying currents in the gene pool for bacterial populations using an integrative approach

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3877988

The Sequence Alignment/Map format and SAMtools

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3877988

Legionella pneumophila: population genetics, phylogeny and genomics

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3877988

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3877988

Distribution of Legionella pneumophila serogroups, monoclonal antibody subgroups and DNA sequence types in recent clinical and environmental isolates from England and Wales (2000-2008).

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3877988

Enhanced Bayesian modelling in BAPS software for learning genetic structures of populations

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3877988

Velvet: algorithms for de novo short read assembly using de Bruijn graphs

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3877988

Dendroscope: An interactive viewer for large phylogenetic trees

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3877988

An African origin for the intimate association between humans and Helicobacter pylori

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3877988

Identifying bacterial genes and endosymbiont DNA with Glimmer

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3877988

Multilocus sequence typing for global surveillance of meningococcal disease.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3877988

Inference of bacterial microevolution using multilocus sequence data

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3877988

Sequences, sequence clusters and bacterial species

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3877988

Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3877988

Consensus sequence-based scheme for epidemiological typing of clinical and environmental isolates of Legionella pneumophila

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3877988

RAxML-III: a fast program for maximum likelihood-based inference of large phylogenetic trees

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3877988

Evidence in the Legionella pneumophila genome for exploitation of host cell functions and high genome plasticity

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3877988

Sequence-based typing of Legionella pneumophila serogroup 1 offers the potential for true portability in legionellosis outbreak investigation.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3877988

When phage, plasmids, and transposons collide: genomic islands, and conjugative- and mobilizable-transposons as a mosaic continuum

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3877988

8 July 2018

How clonal are bacteria?

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3877988

Genetic structure of populations of Legionella pneumophila

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3877988

A comparison of virulence of two strains of Legionella pneumophila based on experimental aerosol infection of guinea-pigs

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3877988

A multicenter evaluation of genotypic methods for the epidemiologic typing of Legionella pneumophila serogroup 1: results of a pan-European study

8 July 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2180-13-302

Mosaic structure of pathogenicity islands in Legionella pneumophila.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2180-13-302

Genetic variability in environmental isolates of Legionella pneumophila from Comunidad Valenciana (Spain).

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2180-13-302

Population structure and recombination in environmental isolates of Legionella pneumophila.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2180-13-302

Comparison of clinical and environmental samples of Legionella pneumophila at the nucleotide sequence level

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2180-13-302

Molecular evolution of key genes for type II secretion in Legionella pneumophila

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2180-13-302

Quantifying nonvertical inheritance in the evolution of Legionella pneumophila.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2180-13-302

Addition of neuA, the gene encoding N-acylneuraminate cytidylyl transferase, increases the discriminatory ability of the consensus sequence-based scheme for typing Legionella pneumophila serogroup 1 strains.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2180-13-302

The impact of homologous recombination on the generation of diversity in bacteria.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2180-13-302

Displaying the relatedness among isolates of bacterial species -- the eBURST approach.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2180-13-302

Bayesian identification of admixture events using multilocus molecular markers.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2180-13-302

Identification and characterization of a new conjugation/type IVA secretion system (trb/tra) of Legionella pneumophila Corby localized on two mobile genomic islands

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2180-13-302

Sequence type analysis and recombinational tests (START).

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2180-13-302

A comparison of homologous recombination rates in bacteria and archaea.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2180-13-302

Clonal population structure of Legionella pneumophila inferred from allelic profiling.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3877988

The Genomic Sequence of the Accidental Pathogen Legionella pneumophila

27 September 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2180-13-302

21 January 2018

Identifiers

DOI

10.1186/1471-2180-13-302

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24364868%20AND%20SRC:MED&resulttype=core&format=json

Dimensions Publication ID

3 March 2020

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24364868%20AND%20SRC:MED&resulttype=core&format=json

3 March 2020

PubMed publication ID

24364868

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24364868%20AND%20SRC:MED&resulttype=core&format=json