(Q35079799)

6 August 2017

title

Phylogenetic study of Class Armophorea (Alveolata, Ciliophora) based on 18S-rDNA data (English)

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6 August 2017

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Thiago da Silva Paiva

series ordinal

1

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6 August 2017

Bárbara do Nascimento Borges

series ordinal

2

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6 August 2017

Inácio Domingos da Silva-Neto

series ordinal

3

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6 August 2017

publication date

8 November 2013

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Genetics and Molecular Biology

6 August 2017

published in

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6 August 2017

volume

36

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6 August 2017

issue

4

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6 August 2017

page(s)

571-585

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Biodiversity and molecular phylogeny of Australian Clevelandella species (Class Armophorea, Order Clevelandellida, Family Clevelandellidae), intestinal endosymbiotic ciliates in the wood-feeding roach Panesthia cribrata Saussure, 1864.

6 August 2017

cites work

1 reference

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8 July 2018

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The systematic position of Paraspathidium Noland, 1937 (Ciliophora, Litostomatea?) inferred from primary SSU rRNA gene sequences and predicted secondary rRNA structure

8 July 2018

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Molecular and morphological evidence for a sister group relationship of the classes Armophorea and Litostomatea (Ciliophora, Intramacronucleata, Lamellicorticata infraphyl. nov.), with an account on basal litostomateans.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3873190

Alternative processing of scrambled genes generates protein diversity in the ciliate Chilodonella uncinata

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3873190

New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3873190

Phylogenetic assessment of alignments reveals neglected tree signal in gaps

8 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3873190

Small subunit rRNA phylogenies show that the class nassophorea is not monophyletic (Phylum Ciliophora).

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3873190

Phylogeny and systematic position of Zosterodasys (Ciliophora, Synhymeniida): a combined analysis of ciliate relationships using morphological and molecular data

8 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3873190

Further consideration of the phylogeny of some "traditional" heterotrichs (Protista, Ciliophora) of uncertain affinities, based on new sequences of the small subunit rRNA gene

8 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3873190

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8 July 2018

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Improvement of phylogenies after removing divergent and ambiguously aligned blocks from protein sequence alignments

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3873190

Approximate likelihood-ratio test for branches: A fast, accurate, and powerful alternative

8 July 2018

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Using models of nucleotide evolution to build phylogenetic trees

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3873190

A Simple, Fast, and Accurate Algorithm to Estimate Large Phylogenies by Maximum Likelihood

8 July 2018

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MrBayes 3: Bayesian phylogenetic inference under mixed models

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3873190

Increased taxon sampling greatly reduces phylogenetic error

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3873190

Evolution of duplicated alpha-tubulin genes in ciliates

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3873190

Bias in phylogenetic estimation and its relevance to the choice between parsimony and likelihood methods

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3873190

Integrating ambiguously aligned regions of DNA sequences in phylogenetic analyses without violating positional homology

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3873190

An approximately unbiased test of phylogenetic tree selection

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3873190

CONSEL: for assessing the confidence of phylogenetic tree selection

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3873190

Multiple acquisition of methanogenic archaeal symbionts by anaerobic ciliates

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3873190

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3873190

MODELTEST: testing the model of DNA substitution

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3873190

Evolution of anaerobic ciliates from the gastrointestinal tract: phylogenetic analysis of the ribosomal repeat from Nyctotherus ovalis and its relatives

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3873190

BIONJ: an improved version of the NJ algorithm based on a simple model of sequence data

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3873190

Effects of nucleotide sequence alignment on phylogeny estimation: a case study of 18S rDNAs of apicomplexa

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3873190

Ribosomal RNA: a key to phylogeny.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3873190

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3873190

Phylogenetic relationships among karyorelictids and heterotrichs inferred from small subunit rRNA sequences: resolution at the base of the ciliate tree.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3873190

Contribution of anaerobic protozoa and methanogens to hindgut metabolic activities of the American cockroach, Periplaneta americana

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3873190

A new look at the statistical model identification

8 July 2018

1 reference

https://api.crossref.org/works/10.1590%2FS1415-47572013000400017

A review of long-branch attraction

21 January 2018

1 reference

https://api.crossref.org/works/10.1590%2FS1415-47572013000400017

Topological bias and inconsistency of maximum likelihood using wrong models.

21 January 2018

1 reference

https://api.crossref.org/works/10.1590%2FS1415-47572013000400017

Estimating Character Weights during Tree Search

21 January 2018

1 reference

https://api.crossref.org/works/10.1590%2FS1415-47572013000400017

Weighting against homoplasy improves phylogenetic analysis of morphological data sets

21 January 2018

1 reference

https://api.crossref.org/works/10.1590%2FS1415-47572013000400017

Comparison of the accuracies of several phylogenetic methods using protein and DNA sequences.

21 January 2018

1 reference

https://api.crossref.org/works/10.1590%2FS1415-47572013000400017

Dramatic diversity of ciliate histone H4 genes revealed by comparisons of patterns of substitutions and paralog divergences among eukaryotes

21 January 2018

1 reference

https://api.crossref.org/works/10.1590%2FS1415-47572013000400017

Opinions on multiple sequence alignment, and an empirical comparison of repeatability and accuracy between POY and structural alignment.

21 January 2018

1 reference

https://api.crossref.org/works/10.1590%2FS1415-47572013000400017

Protocruzia, a highly ambiguous ciliate (Protozoa; Ciliophora): very likely an ancestral form for Heterotrichea, Colpodea or Spirotrichea? With reevaluation of its evolutionary position based on multigene analyses

21 January 2018

1 reference

https://api.crossref.org/works/10.1590%2FS1415-47572013000400017

Caryotricha minuta (Xu et al., 2008) nov. comb., a unique marine ciliate (Protista, Ciliophora, Spirotrichea), with phylogenetic analysis of the ambiguous genus Caryotricha inferred from the small-subunit rRNA gene sequence

21 January 2018

1 reference

https://api.crossref.org/works/10.1590%2FS1415-47572013000400017

The Parsimony Ratchet, a New Method for Rapid Parsimony Analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1590%2FS1415-47572013000400017

Nematode small subunit phylogeny correlates with alignment parameters

21 January 2018

1 reference

https://api.crossref.org/works/10.1590%2FS1415-47572013000400017

Evidence for local ciliate endemism in an alpine anoxic lake.

21 January 2018

1 reference

https://api.crossref.org/works/10.1590%2FS1415-47572013000400017

Voltage-dependent reversal of anodic galvanotaxis in Nyctotherus ovalis

21 January 2018

1 reference

https://api.crossref.org/works/10.1590%2FS1415-47572013000400017

A mitochondrial ancestry of the hydrogenosomes of Nyctotherus ovalis

21 January 2018

1 reference

12 December 2020

Widespread distribution of extensive chromosomal fragmentation in ciliates

1 reference

12 December 2020

Taxon sampling and the accuracy of large phylogenies

1 reference

12 December 2020

Phylogenetic position of species in the genera Anoplophrya, Plagiotoma, and Nyctotheroides (Phylum Ciliophora), endosymbiotic ciliates of annelids and anurans

1 reference

12 December 2020

Cortical morphogenesis and conjugation process in Caenomorpha medusula (Ciliophora, Heterotrichida)

1 reference

12 December 2020

DO PHYLOGENETIC METHODS PRODUCE TREES WITH BIASED SHAPES?

1 reference

12 December 2020

Phylogenetic Inference from Restriction Endonuclease Cleavage Site Maps with Particular Reference to the Evolution of Humans and the Apes

1 reference

12 December 2020

The fine structure of Nyctotherus cordiformis (Ehrenberg)

1 reference

12 December 2020

Multiple origins of anaerobic ciliates with hydrogenosomes within the radiation of aerobic ciliates

1 reference

12 December 2020

10.1590/S1415-47572013000400017

Identifiers

DOI

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6 August 2017

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6 August 2017

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