(Q35084943)

6 August 2017

title

Essential O2-responsive genes of Pseudomonas aeruginosa and their network revealed by integrating dynamic data from inverted conditions (English)

1 reference

6 August 2017

main subject

Pseudomonas aeruginosa

1 reference

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24413814%20AND%20SRC:MED&resulttype=core&format=json

31 May 2020

Padhmanand Sudhakar

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24413814%20AND%20SRC:MED&resulttype=core&format=json

31 May 2020

Jibin Sun

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24413814%20AND%20SRC:MED&resulttype=core&format=json

31 May 2020

An-Ping Zeng

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24413814%20AND%20SRC:MED&resulttype=core&format=json

31 May 2020

author name string

Wei Wang

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24413814%20AND%20SRC:MED&resulttype=core&format=json

31 May 2020

Ping Zheng

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24413814%20AND%20SRC:MED&resulttype=core&format=json

31 May 2020

publication date

1 February 2014

1 reference

6 August 2017

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24413814%20AND%20SRC:MED&resulttype=core&format=json

31 May 2020

volume

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24413814%20AND%20SRC:MED&resulttype=core&format=json

31 May 2020

issue

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24413814%20AND%20SRC:MED&resulttype=core&format=json

31 May 2020

page(s)

215-223

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24413814%20AND%20SRC:MED&resulttype=core&format=json

Effects of reduced mucus oxygen concentration in airway Pseudomonas infections of cystic fibrosis patients

31 May 2020

cites work

1 reference

https://api.crossref.org/works/10.1039%2FC3IB40180D

Pseudomonas aeruginosa anaerobic respiration in biofilms: relationships to cystic fibrosis pathogenesis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC3IB40180D

Responses of Pseudomonas aeruginosa to low oxygen indicate that growth in the cystic fibrosis lung is by aerobic respiration

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC3IB40180D

Microarray analysis of Pseudomonas aeruginosa quorum-sensing regulons: effects of growth phase and environment

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC3IB40180D

Anaerobic growth and cyanide synthesis of Pseudomonas aeruginosa depend on anr, a regulatory gene homologous with fnr of Escherichia coli

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC3IB40180D

Comparative transcriptome analyses of Pseudomonas aeruginosa

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC3IB40180D

Anaerobic adaptation in Pseudomonas aeruginosa: definition of the Anr and Dnr regulons

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC3IB40180D

Proteomic, microarray, and signature-tagged mutagenesis analyses of anaerobic Pseudomonas aeruginosa at pH 6.5, likely representing chronic, late-stage cystic fibrosis airway conditions

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC3IB40180D

The Pseudomonas aeruginosa proteome during anaerobic growth

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC3IB40180D

Heterogeneity in Pseudomonas aeruginosa biofilms includes expression of ribosome hibernation factors in the antibiotic-tolerant subpopulation and hypoxia-induced stress response in the metabolically active population

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC3IB40180D

The small RNA PhrS stimulates synthesis of the Pseudomonas aeruginosa quinolone signal

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC3IB40180D

Reverse engineering and verification of gene networks: principles, assumptions, and limitations of present methods and future perspectives.

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC3IB40180D

PLAU inferred from a correlation network is critical for suppressor function of regulatory T cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC3IB40180D

Functional characterization of the gene PA2384 in large-scale gene regulation in response to iron starvation in Pseudomonas aeruginosa.

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC3IB40180D

Iron deficiency leads to inhibition of oxygen transfer and enhanced formation of virulence factors in cultures of Pseudomonas aeruginosa PAO1.

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC3IB40180D

Alterations in the formation of lipopolysaccharide and membrane vesicles on the surface of Pseudomonas aeruginosa PAO1 under oxygen stress conditions

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC3IB40180D

Reverse engineering biomolecular systems using -omic data: challenges, progress and opportunities

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC3IB40180D

Construction of regulatory networks using expression time-series data of a genotyped population

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC3IB40180D

Wisdom of crowds for robust gene network inference

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC3IB40180D

Efficient reverse-engineering of a developmental gene regulatory network

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC3IB40180D

A predictive model for transcriptional control of physiology in a free living cell.

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC3IB40180D

Optimal sparsity criteria for network inference.

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC3IB40180D

What does biologically meaningful mean? A perspective on gene regulatory network validation

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC3IB40180D

Supervised, semi-supervised and unsupervised inference of gene regulatory networks.

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC3IB40180D

Effect of anaerobiosis and nitrate on gene expression in Pseudomonas aeruginosa

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC3IB40180D

Three rhamnosyltransferases responsible for assembly of the A-band D-rhamnan polysaccharide in Pseudomonas aeruginosa: a fourth transferase, WbpL, is required for the initiation of both A-band and B-band lipopolysaccharide synthesis

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC3IB40180D

Studying and modelling dynamic biological processes using time-series gene expression data

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC3IB40180D

Modeling regulatory cascades using Artificial Neural Networks: the case of transcriptional regulatory networks shaped during the yeast stress response

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC3IB40180D

Using RSAT to scan genome sequences for transcription factor binding sites and cis-regulatory modules

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC3IB40180D

Analysis of promoters recognized by PvdS, an extracytoplasmic-function sigma factor protein from Pseudomonas aeruginosa

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC3IB40180D

Expression of the phytochrome operon in Pseudomonas aeruginosa is dependent on the alternative sigma factor RpoS.

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC3IB40180D

PsrA is a positive transcriptional regulator of the type III secretion system in Pseudomonas aeruginosa

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC3IB40180D

Ferric uptake regulator mutants of Pseudomonas aeruginosa with distinct alterations in the iron-dependent repression of exotoxin A and siderophores in aerobic and microaerobic environments

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC3IB40180D

GeneChip expression analysis of the iron starvation response in Pseudomonas aeruginosa: identification of novel pyoverdine biosynthesis genes

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC3IB40180D

Gene repression by the ferric uptake regulator in Pseudomonas aeruginosa: cycle selection of iron-regulated genes

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC3IB40180D

Genetics and regulation of two distinct haem-uptake systems, phu and has, in Pseudomonas aeruginosa

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC3IB40180D

Role of the Pseudomonas aeruginosa oxyR-recG operon in oxidative stress defense and DNA repair: OxyR-dependent regulation of katB-ankB, ahpB, and ahpC-ahpF

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC3IB40180D

Loss of the oxidative stress regulator OxyR in Pseudomonas aeruginosa PAO1 impairs growth under iron-limited conditions

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC3IB40180D

Global regulation of gene expression by OxyR in an important human opportunistic pathogen

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC3IB40180D

Open source clustering software

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC3IB40180D

Adaptation of E. coli cell method for micro-scale nitrate measurement with the Griess reaction in culture media

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC3IB40180D

Impact of the spotted microarray preprocessing method on fold-change compression and variance stability

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC3IB40180D

A module of negative feedback regulators defines growth factor signaling

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC3IB40180D