Home
Random
Nearby
Log in
Settings
Donate
About Wikidata
Disclaimers
Search
(Q35084958)
Watch
English
Building protein-protein interaction networks with proteomics and informatics tools.
scientific article
In more languages
default for all languages
No label defined
No description defined
edit
Statements
instance of
scholarly article
1 reference
stated in
Europe PubMed Central
PMC publication ID
3129144
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21566121%20AND%20SRC:MED&resulttype=core&format=json
retrieved
31 January 2020
review article
1 reference
stated in
Europe PubMed Central
title
Building protein-protein interaction networks with proteomics and informatics tools
(English)
1 reference
stated in
Europe PubMed Central
PMC publication ID
3129144
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21566121%20AND%20SRC:MED&resulttype=core&format=json
retrieved
31 January 2020
main subject
informatics
0 references
protein-protein interaction
1 reference
based on heuristic
inferred from title
author
Michael P. Washburn
series ordinal
2
1 reference
stated in
Europe PubMed Central
PMC publication ID
3129144
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21566121%20AND%20SRC:MED&resulttype=core&format=json
retrieved
31 January 2020
author name string
Mihaela E Sardiu
series ordinal
1
1 reference
stated in
Europe PubMed Central
PMC publication ID
3129144
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21566121%20AND%20SRC:MED&resulttype=core&format=json
retrieved
31 January 2020
language of work or name
English
0 references
publication date
12 May 2011
1 reference
stated in
Europe PubMed Central
PMC publication ID
3129144
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21566121%20AND%20SRC:MED&resulttype=core&format=json
retrieved
31 January 2020
published in
Journal of Biological Chemistry
1 reference
stated in
Europe PubMed Central
PMC publication ID
3129144
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21566121%20AND%20SRC:MED&resulttype=core&format=json
retrieved
31 January 2020
volume
286
1 reference
stated in
Europe PubMed Central
PMC publication ID
3129144
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21566121%20AND%20SRC:MED&resulttype=core&format=json
retrieved
31 January 2020
issue
27
1 reference
stated in
Europe PubMed Central
PMC publication ID
3129144
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21566121%20AND%20SRC:MED&resulttype=core&format=json
retrieved
31 January 2020
page(s)
23645-23651
1 reference
stated in
Europe PubMed Central
PMC publication ID
3129144
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21566121%20AND%20SRC:MED&resulttype=core&format=json
retrieved
31 January 2020
cites work
Network organization of the human autophagy system
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3129144
retrieved
8 July 2018
A global protein kinase and phosphatase interaction network in yeast.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3129144
retrieved
8 July 2018
Systematic analysis of human protein complexes identifies chromosome segregation proteins
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3129144
retrieved
8 July 2018
Characterization of cell cycle specific protein interaction networks of the yeast 26S proteasome complex by the QTAX strategy
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3129144
retrieved
8 July 2018
Streamlined analysis schema for high-throughput identification of endogenous protein complexes
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3129144
retrieved
8 July 2018
Quantitative mass spectrometry of TATA binding protein-containing complexes and subunit phosphorylations during the cell cycle
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3129144
retrieved
8 July 2018
Cell fate decisions are specified by the dynamic ERK interactome
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3129144
retrieved
8 July 2018
Determining protein complex connectivity using a probabilistic deletion network derived from quantitative proteomics
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3129144
retrieved
8 July 2018
Mammalian two-hybrids come of age.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3129144
retrieved
8 July 2018
Defining the human deubiquitinating enzyme interaction landscape
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3129144
retrieved
8 July 2018
Quantitative strategies to fuel the merger of discovery and hypothesis-driven shotgun proteomics
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3129144
retrieved
8 July 2018
Quantitative interaction proteomics using mass spectrometry
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3129144
retrieved
8 July 2018
An experimentally derived confidence score for binary protein-protein interactions
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3129144
retrieved
8 July 2018
Characterization of the proteasome interaction network using a QTAX-based tag-team strategy and protein interaction network analysis
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3129144
retrieved
8 July 2018
High-quality binary protein interaction map of the yeast interactome network
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3129144
retrieved
8 July 2018
From pull-down data to protein interaction networks and complexes with biological relevance
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3129144
retrieved
8 July 2018
Probabilistic assembly of human protein interaction networks from label-free quantitative proteomics
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3129144
retrieved
8 July 2018
Network modeling links breast cancer susceptibility and centrosome dysfunction
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3129144
retrieved
8 July 2018
Drug-target network
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3129144
retrieved
8 July 2018
The human disease network
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3129144
retrieved
8 July 2018
Revealing static and dynamic modular architecture of the eukaryotic protein interaction network
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3129144
retrieved
8 July 2018
Toward a comprehensive atlas of the physical interactome of Saccharomyces cerevisiae
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3129144
retrieved
8 July 2018
Quantitative proteomic analysis of distinct mammalian Mediator complexes using normalized spectral abundance factors
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3129144
retrieved
8 July 2018
Mining Alzheimer disease relevant proteins from integrated protein interactome data
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3129144
retrieved
8 July 2018
Mass spectrometry-based proteomic analysis of the epitope-tag affinity purified protein complexes in eukaryotes
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3129144
retrieved
8 July 2018
Global topological features of cancer proteins in the human interactome
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3129144
retrieved
8 July 2018
A protein-protein interaction network for human inherited ataxias and disorders of Purkinje cell degeneration
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3129144
retrieved
8 July 2018
Global landscape of protein complexes in the yeast Saccharomyces cerevisiae
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3129144
retrieved
8 July 2018
Proteome survey reveals modularity of the yeast cell machinery
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3129144
retrieved
8 July 2018
An integrated mass spectrometry-based proteomic approach: quantitative analysis of tandem affinity-purified in vivo cross-linked protein complexes (QTAX) to decipher the 26 S proteasome-interacting network.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3129144
retrieved
8 July 2018
Towards a proteome-scale map of the human protein–protein interaction network
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3129144
retrieved
8 July 2018
A human protein-protein interaction network: a resource for annotating the proteome
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3129144
retrieved
8 July 2018
Multiplexed protein quantitation in Saccharomyces cerevisiae using amine-reactive isobaric tagging reagents
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3129144
retrieved
8 July 2018
A protein interaction network links GIT1, an enhancer of huntingtin aggregation, to Huntington's disease
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3129144
retrieved
8 July 2018
Genomic analysis of essentiality within protein networks
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3129144
retrieved
8 July 2018
A map of the interactome network of the metazoan C. elegans
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3129144
retrieved
8 July 2018
A protein interaction map of Drosophila melanogaster
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3129144
retrieved
8 July 2018
Cytoscape: a software environment for integrated models of biomolecular interaction networks
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3129144
retrieved
8 July 2018
Global analysis of protein expression in yeast
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3129144
retrieved
8 July 2018
Absolute quantification of proteins and phosphoproteins from cell lysates by tandem MS
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3129144
retrieved
8 July 2018
Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3129144
retrieved
8 July 2018
A comprehensive analysis of protein-protein interactions in Saccharomyces cerevisiae
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3129144
retrieved
8 July 2018
A generic protein purification method for protein complex characterization and proteome exploration
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3129144
retrieved
8 July 2018
Quantitative analysis of complex protein mixtures using isotope-coded affinity tags
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3129144
retrieved
8 July 2018
A novel genetic system to detect protein-protein interactions
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3129144
retrieved
8 July 2018
Discovering disease-genes by topological features in human protein-protein interaction network
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1074%2FJBC.R110.174052
retrieved
21 January 2018
Statistical Analysis of Membrane Proteome Expression Changes inSaccharomycescerevisiae
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1074%2FJBC.R110.174052
retrieved
21 January 2018
How scale-free are biological networks
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/21566121
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Identifiers
DOI
10.1074/JBC.R110.174052
1 reference
stated in
Europe PubMed Central
PMC publication ID
3129144
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21566121%20AND%20SRC:MED&resulttype=core&format=json
retrieved
31 January 2020
PMC publication ID
3129144
1 reference
stated in
Europe PubMed Central
PMC publication ID
3129144
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21566121%20AND%20SRC:MED&resulttype=core&format=json
retrieved
31 January 2020
PubMed publication ID
21566121
1 reference
stated in
Europe PubMed Central
PMC publication ID
3129144
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21566121%20AND%20SRC:MED&resulttype=core&format=json
retrieved
31 January 2020
Sitelinks
Wikipedia
(0 entries)
edit
Wikibooks
(0 entries)
edit
Wikinews
(0 entries)
edit
Wikiquote
(0 entries)
edit
Wikisource
(0 entries)
edit
Wikiversity
(0 entries)
edit
Wikivoyage
(0 entries)
edit
Wiktionary
(0 entries)
edit
Multilingual sites
(0 entries)
edit