(Q35128127)

6 August 2017

title

Non-canonical CRP sites control competence regulons in Escherichia coli and many other gamma-proteobacteria (English)

1 reference

6 August 2017

0 references

1 reference

Andrew D S Cameron

1

1 reference

6 August 2017

Rosemary J Redfield

series ordinal

2

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6 August 2017

language of work or name

English

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publication date

26 October 2006

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6 August 2017

published in

Nucleic Acids Research

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6 August 2017

volume

34

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6 August 2017

issue

20

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6 August 2017

page(s)

6001-6014

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Evolution of competence and DNA uptake specificity in the Pasteurellaceae.

6 August 2017

cites work

1 reference

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Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection

13 July 2018

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Escherichia coli competence gene homologs are essential for competitive fitness and the use of DNA as a nutrient

13 July 2018

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Toward Automatic Reconstruction of a Highly Resolved Tree of Life

13 July 2018

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Chitin induces natural competence in Vibrio cholerae

13 July 2018

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Limitations and potentials of current motif discovery algorithms

13 July 2018

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Characterization of Mycobacterium tuberculosis Rv3676 (CRPMt), a cyclic AMP receptor protein-like DNA binding protein.

13 July 2018

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Operon formation is driven by co-regulation and not by horizontal gene transfer

13 July 2018

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Genome rearrangement distances and gene order phylogeny in gamma-Proteobacteria

13 July 2018

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A novel CRP-dependent regulon controls expression of competence genes in Haemophilus influenzae.

13 July 2018

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A clp gene homologue belonging to the Crp gene family globally regulates lytic enzyme production, antimicrobial activity, and biological control activity expressed by Lysobacter enzymogenes strain C3.

13 July 2018

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13 July 2018

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PriA helicase and SSB interact physically and functionally.

13 July 2018

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Identification of the CRP regulon using in vitro and in vivo transcriptional profiling

13 July 2018

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Characterization of three new competence-regulated operons in Haemophilus influenzae.

13 July 2018

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Multiple pathways process stalled replication forks

13 July 2018

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WebLogo: A Sequence Logo Generator

13 July 2018

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Catabolite activator protein: DNA binding and transcription activation

13 July 2018

1 reference

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Regulation at complex bacterial promoters: how bacteria use different promoter organizations to produce different regulatory outcomes

13 July 2018

1 reference

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The Vibrio cholerae chitin utilization program

13 July 2018

1 reference

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Evolutionary comparisons suggest many novel cAMP response protein binding sites in Escherichia coli

13 July 2018

1 reference

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An adenylate cyclase-controlled signaling network regulates Pseudomonas aeruginosa virulence in a mouse model of acute pneumonia

13 July 2018

1 reference

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Phylogeny of the bacterial superfamily of Crp-Fnr transcription regulators: exploiting the metabolic spectrum by controlling alternative gene programs

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1635313

Transformation of Streptococcus pneumoniae relies on DprA‐ and RecA‐dependent protection of incoming DNA single strands

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1635313

From gene trees to organismal phylogeny in prokaryotes: the case of the gamma-Proteobacteria

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1635313

Regulatory sequence analysis tools

13 July 2018

1 reference

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Coordinate regulation of bacterial virulence genes by a novel adenylate cyclase-dependent signaling pathway

13 July 2018

1 reference

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Purine regulon of gamma-proteobacteria: a detailed description

13 July 2018

1 reference

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GyrI: a counter-defensive strategy against proteinaceous inhibitors of DNA gyrase

13 July 2018

1 reference

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A simple mechanism for co-dependence on two activators at an Escherichia coli promoter

13 July 2018

1 reference

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Indirect readout of DNA sequence at the primary-kink site in the CAP-DNA complex: alteration of DNA binding specificity through alteration of DNA kinking

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1635313

Indirect readout of DNA sequence at the primary-kink site in the CAP-DNA complex: DNA binding specificity based on energetics of DNA kinking

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1635313

DNA as a Nutrient: Novel Role for Bacterial Competence Gene Homologs

13 July 2018

1 reference

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A comparative genomics approach to prediction of new members of regulons

13 July 2018

1 reference

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BioProspector: discovering conserved DNA motifs in upstream regulatory regions of co-expressed genes.

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1635313

Synergistic transcription activation: a dual role for CRP in the activation of an Escherichia coli promoter depending on MalT and CRP

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1635313

Transcription activation at the Escherichia coli melAB promoter: the role of MelR and the cyclic AMP receptor protein

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1635313

PpdD type IV pilin of Escherichia coli K-12 can Be assembled into pili in Pseudomonas aeruginosa

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1635313

Transcription activation by catabolite activator protein (CAP)

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1635313

Identifying DNA and protein patterns with statistically significant alignments of multiple sequences

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1635313

Positive and negative transcriptional regulation of the Escherichia coli gluconate regulon gene gntT by GntR and the cyclic AMP (cAMP)-cAMP receptor protein complex

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1635313

A new transformation-deficient mutant of Haemophilus influenzae Rd with normal DNA uptake.

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1635313

Vfr controls quorum sensing in Pseudomonas aeruginosa

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1635313

Cyclic AMP and its receptor protein negatively regulate the coordinate expression of cholera toxin and toxin-coregulated pilus in Vibrio cholerae

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1635313

Structure of the CAP-DNA complex at 2.5 angstroms resolution: a complete picture of the protein-DNA interface

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1635313

Gibbs motif sampling: detection of bacterial outer membrane protein repeats

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1635313

Bacterial gene transfer by natural genetic transformation in the environment

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1635313

The Haemophilus influenzae sxy-1 mutation is in a newly identified gene essential for competence

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1635313

DNA sequence and characterization of Haemophilus influenzae dprA+, a gene required for chromosomal but not plasmid DNA transformation

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1635313

Pseudomonas stutzeri and related species undergo natural transformation

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1635313

On the different binding affinities of CRP at thelac, galandmalT promoter regions

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1635313

Structure of catabolite gene activator protein at 2.9 A resolution suggests binding to left-handed B-DNA.

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1635313

Cyclic AMP receptor protein of E. coli: its role in the synthesis of inducible enzymes

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1635313

Identifying protein-binding sites from unaligned DNA fragments

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1635313

Binding of the Escherichia coli cyclic AMP receptor protein to DNA fragments containing consensus nucleotide sequences

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1635313

A Xanthomonas campestris pv. campestris protein similar to catabolite activation factor is involved in regulation of phytopathogenicity

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1635313

Nucleotide sequence of a cluster of genes involved in the transformation of Haemophilus influenzae Rd.

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1635313

Crystal structure of a CAP-DNA complex: the DNA is bent by 90 degrees

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1635313

The gene encoding cAMP receptor protein is required for competence development in Haemophilus influenzae Rd.

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1635313

DNA binding specificity and sequence of Xanthomonas campestris catabolite gene activator protein-like protein

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1635313

Effect of the crp mutation on the utilization of transferrin-bound iron by Vibrio vulnificus.

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1635313

DNA array analysis of gene expression in response to UV irradiation in Escherichia coli

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1635313

Role of protein-protein bridging interactions on cooperative assembly of DNA-bound CRP-CytR-CRP complex and regulation of the Escherichia coli CytR regulon.

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1635313

Effect of vfr mutation on global gene expression and catabolite repression control of Pseudomonas aeruginosa

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1635313

The C-terminal domains of the RNA polymerase alpha subunits: contact site with Fis and localization during co-activation with CRP at the Escherichia coli proP P2 promoter.

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1635313

Competence development by Haemophilus influenzae is regulated by the availability of nucleic acid precursors

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1635313

Tandem repeat recombination induced by replication fork defects in Escherichia coli requires a novel factor, RadC.

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1635313

Mode of selectivity in cyclic AMP receptor protein-dependent promoters in Escherichia coli.

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1635313

Extracellular DNA plays a key role in deep-sea ecosystem functioning

27 September 2018

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1635313

27 September 2018

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1635313

The origin of DNA associated with mucus glycoproteins in cystic fibrosis sputum

16 November 2018

1 reference

12 December 2020

Regulation of competence development in Haemophilus influenzae

1 reference

12 December 2020

DNA sequence determinants for binding of the Escherichia coli catabolite gene activator protein

1 reference

12 December 2020

Genes for breakfast: the have-your-cake-and-eat-it-too of bacterial transformation

1 reference

12 December 2020

Identification of DNA gyrase inhibitor (GyrI) in Escherichia coli

1 reference

12 December 2020

Identifiers

DOI

10.1093/NAR/GKL734

1 reference

6 August 2017

1 reference

6 August 2017

1 reference