(Q35130332)

6 August 2017

title

Spontaneous sharp bending of DNA: role of melting bubbles (English)

1 reference

6 August 2017

Chongli Yuan

1

1 reference

6 August 2017

Elizabeth Rhoades

series ordinal

2

1 reference

6 August 2017

Xiong Wen Lou

series ordinal

3

1 reference

6 August 2017

Lynden A Archer

series ordinal

4

1 reference

6 August 2017

language of work or name

English

0 references

publication date

5 September 2006

1 reference

6 August 2017

published in

Nucleic Acids Research

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6 August 2017

volume

34

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6 August 2017

issue

16

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6 August 2017

page(s)

4554-4560

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Changes in DNA bending and flexing due to tethered cations detected by fluorescence resonance energy transfer

6 August 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1636343

Base-stacking and base-pairing contributions into thermal stability of the DNA double helix

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1636343

Mismatch-induced DNA unbending upon duplex opening

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1636343

Cyclization of short DNA fragments and bending fluctuations of the double helix

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1636343

Exact theory of kinkable elastic polymers.

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1636343

DNA twisting flexibility and the formation of sharply looped protein-DNA complexes

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1636343

Origin of the intrinsic rigidity of DNA.

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1636343

The thermodynamics of DNA structural motifs

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1636343

IHF and HU: flexible architects of bent DNA.

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1636343

Probing single-stranded DNA conformational flexibility using fluorescence spectroscopy

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1636343

Statistical mechanics of sequence-dependent circular DNA and its application for DNA cyclization

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1636343

Overstretching B-DNA: the elastic response of individual double-stranded and single-stranded DNA molecules

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1636343

Detection of localized DNA flexibility

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1636343

DNA flexibility studied by covalent closure of short fragments into circles

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1636343

DNA bending, flexibility, and helical repeat by cyclization kinetics.

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1636343

Conformational dependence of intracellular NADH on metabolic state revealed by associated fluorescence anisotropy.

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1636343

Spontaneous sharp bending of double-stranded DNA.

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1636343

Distance parameters derived from time-resolved Förster resonance energy transfer measurements and their use in structural interpretations of thermodynamic quantities associated with protein-DNA interactions

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1636343

DNA binding of a non-sequence-specific HMG-D protein is entropy driven with a substantial non-electrostatic contribution.

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1636343

The trapping of a spontaneously "flipped-out" base from double helical nucleic acids by host-guest complexation with beta-cyclodextrin: the intrinsic base-flipping rate constant for DNA and RNA.

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1636343

Global structure of three-way DNA junctions with and without additional unpaired bases: a fluorescence resonance energy transfer analysis

27 September 2018

1 reference

12 December 2020

Donor-acceptor distance distributions in a double-labeled fluorescent oligonucleotide both as a single strand and in duplexes

1 reference

12 December 2020

Statistics of loop formation along double helix DNAs

1 reference

12 December 2020

Radial Distribution Function of Semiflexible Polymers

1 reference

12 December 2020

Localized single-stranded bubble mechanism for cyclization of short double helix DNA

1 reference

12 December 2020

Configurational Statistics of Polynucleotide Chains. A Single Virtual Bond Treatment

1 reference

12 December 2020

Identifiers

DOI

10.1093/NAR/GKL394

1 reference

6 August 2017

1 reference

6 August 2017

1 reference