(Q35177572)

6 August 2017

title

Prediction of plant promoters based on hexamers and random triplet pair analysis (English)

1 reference

6 August 2017

A K M Azad

1

1 reference

6 August 2017

Saima Shahid

series ordinal

2

1 reference

6 August 2017

Nasimul Noman

series ordinal

3

1 reference

6 August 2017

Hyunju Lee

series ordinal

4

1 reference

6 August 2017

language of work or name

1 reference

28 June 2011

1 reference

Algorithms for Molecular Biology

6 August 2017

published in

1 reference

6 August 2017

volume

6

1 reference

6 August 2017

page(s)

19

1 reference

https://scigraph.springernature.com/pub.10.1186/1748-7188-6-19

6 August 2017

exact match

0 references

cites work

Characterization of statistical features for plant microRNA prediction.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3160368

Toward a gold standard for promoter prediction evaluation

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3160368

Searching for bidirectional promoters in Arabidopsis thaliana

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3160368

Jalview Version 2--a multiple sequence alignment editor and analysis workbench

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3160368

Pol II promoter prediction using characteristic 4-mer motifs: a machine learning approach

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3160368

A helix scaffold for the assembly of active protein kinases

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3160368

Generic eukaryotic core promoter prediction using structural features of DNA.

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3160368

miRBase: tools for microRNA genomics

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3160368

Differentiation of core promoter architecture between plants and mammals revealed by LDSS analysis.

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3160368

Genome wide analysis of Arabidopsis core promoters

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3160368

Plant promoter prediction with confidence estimation

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3160368

PlantGDB, plant genome database and analysis tools

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3160368

PlantProm: a database of plant promoter sequences

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3160368

Distribution and characterization of regulatory elements in the human genome

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3160368

The Gene-Finder computer tools for analysis of human and model organisms genome sequences

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3160368

Eukaryotic promoter recognition

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3160368

Predicting Pol II promoter sequences using transcription factor binding sites

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3160368

Conserved spatial patterns across the protein kinase family

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3160368

The three classes of triplet profiles of natural genomes

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3160368

Computational analysis of plant RNA Pol-II promoters.

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3160368

Seven clusters in genomic triplet distributions.

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3160368

Application of a time-delay neural network to promoter annotation in the Drosophila melanogaster genome

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3160368

Promoter2.0: for the recognition of PolII promoter sequences.

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3160368

Joint modeling of DNA sequence and physical properties to improve eukaryotic promoter recognition

27 September 2018

1 reference

12 December 2020

A pattern-based nearest neighbor search approach for promoter prediction using DNA structural profiles

1 reference

12 December 2020

Genome-wide analysis of rice (Oryza sativa L. subsp. japonica) TATA box and Y Patch promoter elements

1 reference

12 December 2020

Sequences surrounding the transcription initiation site of the Arabidopsis enoyl-acyl carrier protein reductase gene control seed expression in transgenic tobacco

1 reference

12 December 2020

Identifiers

DOI

10.1186/1748-7188-6-19

1 reference

6 August 2017

DBLP publication ID

journals/almob/AzadSNL11

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

0 references

1 reference

6 August 2017

1 reference