(Q35208200)

7 August 2017

3 references

19 September 2019

31 October 2020

7 April 2021

Use of prior knowledge for the analysis of high-throughput transcriptomics and metabolomics data (English)

1 reference

biomedical investigative technique

7 August 2017

0 references

1 reference

19 September 2019

2 references

31 October 2020

gene expression profiling

1 reference

7 April 2021

1 reference

Polina Reshetova

1

1 reference

7 August 2017

Age K Smilde

series ordinal

2

1 reference

7 August 2017

Antoine H C van Kampen

series ordinal

3

1 reference

7 August 2017

Johan A Westerhuis

series ordinal

4

1 reference

7 August 2017

publication date

13 March 2014

4 references

7 August 2017

19 September 2019

31 October 2020

7 April 2021

4 references

7 August 2017

19 September 2019

31 October 2020

7 April 2021

8 Suppl 2

1 reference

7 August 2017

page(s)

S2

1 reference

Creative Commons Attribution 2.0 Generic

7 August 2017

copyright license

3 references

19 September 2019

31 October 2020

Lipogenesis and lipolysis: the pathways exploited by the cancer cells to acquire fatty acids

7 April 2021

0 references

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4101693

A critical evaluation of network and pathway-based classifiers for outcome prediction in breast cancer

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4101693

Analysis of exome sequences with and without incorporating prior biological knowledge.

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4101693

KEGG for integration and interpretation of large-scale molecular data sets

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4101693

Graph constrained discriminant analysis: a new method for the integration of a graph into a classification process

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4101693

Protein networks as logic functions in development and cancer

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4101693

Massive genomic rearrangement acquired in a single catastrophic event during cancer development

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4101693

Trimming of mammalian transcriptional networks using network component analysis

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4101693

MSEA: a web-based tool to identify biologically meaningful patterns in quantitative metabolomic data

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4101693

Dynamically weighted clustering with noise set.

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4101693

Metabolomics data exploration guided by prior knowledge

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4101693

Mining gene functional networks to improve mass-spectrometry-based protein identification

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4101693

A general modular framework for gene set enrichment analysis

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4101693

Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4101693

The TRANSFAC project as an example of framework technology that supports the analysis of genomic regulation.

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4101693

Network-constrained regularization and variable selection for analysis of genomic data

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4101693

A map of human cancer signaling

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4101693

Hierarchical tree snipping: clustering guided by prior knowledge.

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4101693

The Gene Ontology project in 2008

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4101693

Network-based classification of breast cancer metastasis

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4101693

Incorporating prior knowledge of gene functional groups into regularized discriminant analysis of microarray data

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4101693

Penalized and weighted K-means for clustering with scattered objects and prior information in high-throughput biological data

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4101693

Classification of microarray data using gene networks

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4101693

Incorporating gene functions as priors in model-based clustering of microarray gene expression data

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4101693

Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4101693

A knowledge-based clustering algorithm driven by Gene Ontology

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4101693

A global test for groups of genes: testing association with a clinical outcome

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4101693

Network component analysis: reconstruction of regulatory signals in biological systems

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4101693

Co-clustering of biological networks and gene expression data

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4101693

Inference of transcriptional regulatory network by two-stage constrained space factor analysis

13 July 2018

1 reference

Crossref

https://api.crossref.org/works/10.1186%2F1752-0509-8-S2-S2

Over-optimism in bioinformatics: an illustration

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1186%2F1752-0509-8-S2-S2

Global test for metabolic pathway differences between conditions.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4101693

A shrinkage approach to large-scale covariance matrix estimation and implications for functional genomics.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4101693

10.1186/1752-0509-8-S2-S2

26 September 2018

Identifiers

DOI

1 reference

journals/bmcsb/ReshetovaSKW14

7 August 2017

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

1028340499

0 references

Fatcat ID

release_424x33uawfeotk6x72gs7rf4wm

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/424x33uawfeotk6x72gs7rf4wm

mapped directly with Wikidata item

24 November 2022

based on heuristic

PMC publication ID

4101693

1 reference

7 August 2017

1 reference