(Q35213056)

7 August 2017

title

Alternative fates of paused ribosomes during translation termination (English)

1 reference

7 August 2017

Jason S Seidman

1

1 reference

7 August 2017

Brian D Janssen

series ordinal

2

1 reference

7 August 2017

Christopher S Hayes

series ordinal

3

1 reference

7 August 2017

language of work or name

English

0 references

publication date

11 July 2011

1 reference

Journal of Biological Chemistry

7 August 2017

number of pages

8

1 reference

based on heuristic

inferred from page(s)

published in

1 reference

7 August 2017

volume

286

1 reference

7 August 2017

issue

36

1 reference

7 August 2017

page(s)

31105-31112

1 reference

tmRNA regulates synthesis of the ArfA ribosome rescue factor

7 August 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3173060

Two groups of phenylalanine biosynthetic operon leader peptides genes: a high level of apparently incidental frameshifting in decoding Escherichia coli pheL.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3173060

The N-terminus of GalE induces tmRNA activity in Escherichia coli

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3173060

Translation factor LepA contributes to tellurite resistance in Escherichia coli but plays no apparent role in the fidelity of protein synthesis

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3173060

A gripping tale of ribosomal frameshifting: extragenic suppressors of frameshift mutations spotlight P-site realignment

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3173060

Amino acid starvation and colicin D treatment induce A-site mRNA cleavage in Escherichia coli

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3173060

Alterations in the two globular domains or in the connecting alpha-helix of bacterial ribosomal protein L9 induces +1 frameshifts

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3173060

Ribosome recycling factor and release factor 3 action promotes TnaC-peptidyl-tRNA Dropoff and relieves ribosome stalling during tryptophan induction of tna operon expression in Escherichia coli

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3173060

Prolyl-tRNA(Pro) in the A-site of SecM-arrested ribosomes inhibits the recruitment of transfer-messenger RNA.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3173060

Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3173060

A previously uncharacterized role for small protein B (SmpB) in transfer messenger RNA-mediated trans-translation

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3173060

Function of the SmpB tail in transfer-messenger RNA translation revealed by a nucleus-encoded form

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3173060

Ribosome rescue by tmRNA requires truncated mRNAs

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3173060

P-site tRNA is a crucial initiator of ribosomal frameshifting.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3173060

Sequences that direct significant levels of frameshifting are frequent in coding regions of Escherichia coli.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3173060

Comparative analysis of ribosomal proteins in complete genomes: an example of reductive evolution at the domain scale

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3173060

Stop codons preceded by rare arginine codons are efficient determinants of SsrA tagging in Escherichia coli

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3173060

Reproducing tna operon regulation in vitro in an S-30 system. Tryptophan induction inhibits cleavage of TnaC peptidyl-tRNA.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3173060

The SsrA-SmpB system for protein tagging, directed degradation and ribosome rescue

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3173060

One protein from two open reading frames: mechanism of a 50 nt translational bypass.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3173060

SsrA-mediated peptide tagging caused by rare codons and tRNA scarcity

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3173060

SmpB, a unique RNA-binding protein essential for the peptide-tagging activity of SsrA (tmRNA).

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3173060

The ClpXP and ClpAP proteases degrade proteins with carboxy-terminal peptide tails added by the SsrA-tagging system

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3173060

Accumulation of a mRNA decay intermediate by ribosomal pausing at a stop codon

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3173060

Structure of the C-terminal end of the nascent peptide influences translation termination

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3173060

The second to last amino acid in the nascent peptide as a codon context determinant.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3173060

Crystal structure of prokaryotic ribosomal protein L9: a bi-lobed RNA-binding protein

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3173060

A mutation in ribosomal protein L9 affects ribosomal hopping during translation of gene 60 from bacteriophage T4.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3173060

Culture medium for enterobacteria

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3173060

Expression of peptide chain release factor 2 requires high-efficiency frameshift.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3173060

Recoding: dynamic reprogramming of translation.

28 July 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M111.268201

Analysis of the roles of tRNA structure, ribosomal protein L9, and the bacteriophage T4 gene 60 bypassing signals during ribosome slippage on mRNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M111.268201

Role of a peptide tagging system in degradation of proteins synthesized from damaged messenger RNA

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M111.268201

Proline residues at the C terminus of nascent chains induce SsrA tagging during translation termination

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M111.268201

Kinetics of paused ribosome recycling in Escherichia coli

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M111.268201

Ribosomal protein L9 interactions with 23 S rRNA: the use of a translational bypass assay to study the effect of amino acid substitutions.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M111.268201

The 23 S rRNA environment of ribosomal protein L9 in the 50 S ribosomal subunit

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M111.268201

Ribosome rescue by Escherichia coli ArfA (YhdL) in the absence of trans-translation system.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M111.268201

tRNA slippage at the tmRNA resume codon

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M111.268201

Co-variation of tRNA abundance and codon usage in Escherichia coli at different growth rates.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M111.268201

The ribosomal grip of the peptidyl-tRNA is critical for reading frame maintenance.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M111.268201

Codon pairs in the genome of Escherichia coli.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M111.268201

The mechanism of tryptophan induction of tryptophanase operon expression: tryptophan inhibits release factor-mediated cleavage of TnaC-peptidyl-tRNA(Pro).

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M111.268201

Structures of the bacterial ribosome at 3.5 A resolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M111.268201

Cleavage of the A site mRNA codon during ribosome pausing provides a mechanism for translational quality control

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21757758

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1074/JBC.M111.268201

1 reference

7 August 2017

1 reference

7 August 2017

1 reference