(Q35213109)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21768096%20AND%20SRC:MED&resulttype=core&format=json

7 February 2020

title

Direct quantification of the attempt frequency determining the mechanical unfolding of ubiquitin protein (English)

1 reference

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7 February 2020

1

1 reference

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7 February 2020

Sergi Garcia-Manyes

series ordinal

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21768096%20AND%20SRC:MED&resulttype=core&format=json

7 February 2020

author name string

Julio M Fernández

series ordinal

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21768096%20AND%20SRC:MED&resulttype=core&format=json

7 February 2020

language of work or name

English

0 references

publication date

16 July 2011

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21768096%20AND%20SRC:MED&resulttype=core&format=json

7 February 2020

number of pages

8

1 reference

Journal of Biological Chemistry

inferred from page(s)

published in

1 reference

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7 February 2020

volume

286

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21768096%20AND%20SRC:MED&resulttype=core&format=json

7 February 2020

issue

36

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21768096%20AND%20SRC:MED&resulttype=core&format=json

7 February 2020

page(s)

31072-31079

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21768096%20AND%20SRC:MED&resulttype=core&format=json

Probing osmolyte participation in the unfolding transition state of a protein

7 February 2020

cites work

1 reference

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Kinetic measurements on single-molecule disulfide bond cleavage

13 July 2018

1 reference

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Contrasting the individual reactive pathways in protein unfolding and disulfide bond reduction observed within a single protein.

13 July 2018

1 reference

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Folding of the Pit1 homeodomain near the speed limit

13 July 2018

1 reference

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Water's role in the force-induced unfolding of ubiquitin.

13 July 2018

1 reference

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Complex unfolding kinetics of single-domain proteins in the presence of force

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3173078

Thermal unfolding kinetics of ubiquitin in the microsecond-to-second time range probed by Tyr-59 fluorescence.

13 July 2018

1 reference

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Probing static disorder in Arrhenius kinetics by single-molecule force spectroscopy.

13 July 2018

1 reference

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Collapse dynamics of single proteins extended by force

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3173078

Solvent viscosity and friction in protein folding dynamics

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3173078

Single-molecule force spectroscopy approach to enzyme catalysis

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3173078

Temperature and chemical denaturant dependence of forced unfolding of titin I27.

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3173078

Direct observation of an ensemble of stable collapsed states in the mechanical folding of ubiquitin

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3173078

Mechanical characterization of protein L in the low-force regime by electromagnetic tweezers/evanescent nanometry.

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3173078

Measuring internal friction of an ultrafast-folding protein

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3173078

The effect of temperature on mechanical resistance of the native and intermediate states of I27.

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3173078

Single-molecule force spectroscopy measurements of bond elongation during a bimolecular reaction

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3173078

Temperature-dependent downhill unfolding of ubiquitin. I. Nanosecond-to-millisecond resolved nonlinear infrared spectroscopy

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3173078

Solvent molecules bridge the mechanical unfolding transition state of a protein

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3173078

Mechanical biochemistry of proteins one molecule at a time.

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3173078

Force-clamp spectroscopy of single-protein monomers reveals the individual unfolding and folding pathways of I27 and ubiquitin

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3173078

Signatures of hydrophobic collapse in extended proteins captured with force spectroscopy

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3173078

Dwell-time distribution analysis of polyprotein unfolding using force-clamp spectroscopy.

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3173078

Modeling the kinetics of bimolecular reactions

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3173078

Protein folding is slaved to solvent motions

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3173078

Multidimensional tunneling, recrossing, and the transmission coefficient for enzymatic reactions

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3173078

The molecular elasticity of the insect flight muscle proteins projectin and kettin

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3173078

Dissecting the mechanical unfolding of ubiquitin

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3173078

Mechanical processes in biochemistry

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3173078

The unfolding kinetics of ubiquitin captured with single-molecule force-clamp techniques

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3173078

The protein folding 'speed limit'.

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3173078

How enzymes work: analysis by modern rate theory and computer simulations

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3173078

Pathway shifts and thermal softening in temperature-coupled forced unfolding of spectrin domains

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3173078

How fast is protein hydrophobic collapse?

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3173078

Unfolding pathways of native bacteriorhodopsin depend on temperature.

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3173078

Can energy landscape roughness of proteins and RNA be measured by using mechanical unfolding experiments?

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3173078

Probing the free-energy surface for protein folding with single-molecule fluorescence spectroscopy

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3173078

The key event in force-induced unfolding of Titin's immunoglobulin domains

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3173078

The speed limit for protein folding measured by triplet-triplet energy transfer.

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3173078

Mechanical and chemical unfolding of a single protein: a comparison

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3173078

Protein folding in the landscape perspective: chevron plots and non-Arrhenius kinetics

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3173078

Protein folding kinetics exhibit an Arrhenius temperature dependence when corrected for the temperature dependence of protein stability

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3173078

Diffusion-limited contact formation in unfolded cytochrome c: estimating the maximum rate of protein folding

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3173078

Models for the Specific Adhesion of Cells to Cells

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3173078

How do small single-domain proteins fold?

13 July 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M111.264093

Thermal unfolding of an intermediate is associated with non-arrhenius kinetics in the folding of hen lysozyme

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M111.264093

The nature of the free energy barriers to two-state folding.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M111.264093

Force-clamp spectroscopy monitors the folding trajectory of a single protein

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M111.264093

Mechanical unfolding pathways of the enhanced yellow fluorescent protein revealed by single molecule force spectroscopy.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M111.264093

Reaction rate theory: what it was, where is it today, and where is it going?

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M111.264093

Reaction-rate theory: fifty years after Kramers

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M111.264093

Force-activated reactivity switch in a bimolecular chemical reaction.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M111.264093

Mechanical unfolding revisited through a simple but realistic model.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M111.264093

Direct evidence of the multidimensionality of the free-energy landscapes of proteins revealed by mechanical probes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M111.264093

The Activated Complex in Chemical Reactions

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M111.264093

Current status of transition-state theory

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M111.264093

Folding at the speed limit

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M111.264093

Thermostability of irreversible unfolding alpha-amylases analyzed by unfolding kinetics

21 January 2018

1 reference

12 December 2020

Temperature softening of a protein in single-molecule experiments

1 reference

12 December 2020

A theoretical analysis of rate constants and kinetic isotope effects corresponding to different reactant valleys in lactate dehydrogenase

1 reference

12 December 2020

P22 Arc repressor: folding kinetics of a single-domain, dimeric protein

1 reference

12 December 2020

Reversible unfolding of individual titin immunoglobulin domains by AFM

1 reference

12 December 2020

Chain collapse can occur concomitantly with the rate-limiting step in protein folding

1 reference

12 December 2020

Folding kinetics of the all-beta-sheet protein human basic fibroblast growth factor, a structural homolog of interleukin-1beta

1 reference

12 December 2020

Non-arrhenius behavior in the unfolding of a short, hydrophobic alpha-helix. Complementarity of molecular dynamics and lattice model simulations

1 reference

12 December 2020

Identifiers

DOI

10.1074/JBC.M111.264093

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21768096%20AND%20SRC:MED&resulttype=core&format=json

7 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21768096%20AND%20SRC:MED&resulttype=core&format=json

7 February 2020

PubMed publication ID

21768096

1 reference