(Q35213191)

7 August 2017

RNA folding in transcription elongation complex: implication for transcription termination (English)

1 reference

7 August 2017

Lucyna Lubkowska

1

1 reference

7 August 2017

Anu S Maharjan

series ordinal

2

1 reference

7 August 2017

Natalia Komissarova

series ordinal

3

1 reference

7 August 2017

language of work or name

English

0 references

publication date

5 July 2011

1 reference

Journal of Biological Chemistry

7 August 2017

1 reference

7 August 2017

286

1 reference

7 August 2017

36

1 reference

7 August 2017

31576-31585

1 reference

Complete Structural Model of Escherichia coli RNA Polymerase from a Hybrid Approach

7 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3173116

Imprecise transcription termination within Escherichia coli greA leader gives rise to an array of short transcripts, GraL

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3173116

The role of mRNA structure in translational control in bacteria

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3173116

Riboswitches: from ancient gene-control systems to modern drug targets

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3173116

Small RNAs in transcriptional gene silencing and genome defence

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3173116

siRNA-mediated heterochromatin establishment requires HP1 and is associated with antisense transcription

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3173116

Dynamics of co-transcriptional pre-mRNA folding influences the induction of dystrophin exon skipping by antisense oligonucleotides

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3173116

Applied force reveals mechanistic and energetic details of transcription termination

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3173116

An Allosteric Path to Transcription Termination

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3173116

Pre-mRNA secondary structures influence exon recognition.

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3173116

RNA-based regulation of genes of tryptophan synthesis and degradation, in bacteria

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3173116

The ribosome as an RNA-based molecular machine.

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3173116

MicroRNAs: genomics, biogenesis, mechanism, and function

13 July 2018

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3173116

13 July 2018

https://api.crossref.org/works/10.1074%2FJBC.M111.249359

Mfold web server for nucleic acid folding and hybridization prediction

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3173116

Structural basis of transcription: an RNA polymerase II elongation complex at 3.3 A resolution

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3173116

RNA polymerase: structural similarities between bacterial RNA polymerase and eukaryotic RNA polymerase II.

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3173116

A structural model of transcription elongation

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3173116

Recent insights on RNA folding mechanisms from catalytic RNA.

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3173116

Characterization of transient RNA-RNA interactions important for the facilitated structure formation of bacterial ribosomal 16S RNA.

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3173116

Folding of a large ribozyme during transcription and the effect of the elongation factor NusA.

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3173116

Functional topography of nascent RNA in elongation intermediates of RNA polymerase

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3173116

Transcriptional pausing at +62 of the HIV-1 nascent RNA modulates formation of the TAR RNA structure

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3173116

Multiple interactions stabilize a single paused transcription intermediate in which hairpin to 3' end spacing distinguishes pause and termination pathways.

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3173116

Transcriptional arrest: Escherichia coli RNA polymerase translocates backward, leaving the 3' end of the RNA intact and extruded

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3173116

Histidine-tagged RNA polymerase of Escherichia coli and transcription in solid phase.

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3173116

Coupling of rRNA transcription and ribosomal assembly in vivo. Formation of active ribosomal subunits in Escherichia coli requires transcription of rRNA genes by host RNA polymerase which cannot be replaced by bacteriophage T7 RNA polymerase.

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3173116

Translocation of the Escherichia coli transcription complex observed in the registers 11 to 20: "jumping" of RNA polymerase and asymmetric expansion and contraction of the "transcription bubble".

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3173116

Transcription termination at intrinsic terminators: the role of the RNA hairpin

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3173116

RNAII transcribed by IPTG-induced T7 RNA polymerase is non-functional as a replication primer for ColE1-type plasmids in Escherichia coli

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3173116

Translational control of maturation-protein synthesis in phage MS2: a role for the kinetics of RNA folding?

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3173116

A chain of interlinked genes in the nin R region of bacteriophage lambda

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3173116

Early transcribed sequences affect termination efficiency of Escherichia coli RNA polymerase

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3173116

Sequences linked to prokaryotic promoters can affect the efficiency of downstream termination sites

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3173116

A thermodynamic analysis of RNA transcript elongation and termination in Escherichia coli

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3173116

Prediction of rho-independent Escherichia coli transcription terminators. A statistical analysis of their RNA stem-loop structures.

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3173116

RNA chain elongation by Escherichia coli RNA polymerase. Factors affecting the stability of elongating ternary complexes

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3173116

The importance of RNA secondary structure in CoIE1 primer formation

13 July 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M111.249359

Transcripts that increase the processivity and elongation rate of RNA polymerase.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M111.249359

Transcriptional pausing in vivo: a nascent RNA hairpin restricts lateral movements of RNA polymerase in both forward and reverse directions.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M111.249359

Effect of transcription on folding of the Tetrahymena ribozyme

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M111.249359

The RNA-DNA hybrid maintains the register of transcription by preventing backtracking of RNA polymerase.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M111.249359

Crucial role of the RNA:DNA hybrid in the processivity of transcription

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M111.249359

Shortening of RNA:DNA hybrid in the elongation complex of RNA polymerase is a prerequisite for transcription termination

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M111.249359

nusA protein of Escherichia coli is an efficient transcription termination factor for certain terminator sites

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M111.249359

Transcription termination: primary intermediates and secondary adducts.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M111.249359

Effects of RNA secondary structure on alternative splicing of Pre-mRNA: Is folding limited to a region behind the transcribing RNA polymerase?

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M111.249359

Functional importance of sequence in the stem-loop of a transcription terminator

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21730066

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Mechanism of intrinsic transcription termination and antitermination

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21730066

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Mutations in the leader region of ribosomal RNA operons cause structurally defective 30 S ribosomes as revealed by in vivo structural probing

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21730066

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1074/JBC.M111.249359

1 reference

7 August 2017

1 reference

7 August 2017

1 reference