(Q35235397)

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Investigating the path of plastid genome degradation in an early-transitional clade of heterotrophic orchids, and implications for heterotrophic angiosperms

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scholarly article

1 reference

Europe PubMed Central

7 August 2017

Investigating the path of plastid genome degradation in an early-transitional clade of heterotrophic orchids, and implications for heterotrophic angiosperms (English)

1 reference

Europe PubMed Central

7 August 2017

0 references

author name string

Craig F Barrett

1

1 reference

Europe PubMed Central

7 August 2017

John V Freudenstein

2

1 reference

Europe PubMed Central

7 August 2017

Jeff Li

3

1 reference

Europe PubMed Central

7 August 2017

Dustin R Mayfield-Jones

4

1 reference

Europe PubMed Central

7 August 2017

Leticia Perez

5

1 reference

Europe PubMed Central

7 August 2017

J Chris Pires

6

1 reference

Europe PubMed Central

7 August 2017

Cristian Santos

7

1 reference

Europe PubMed Central

7 August 2017

publication date

28 August 2014

1 reference

Europe PubMed Central

7 August 2017

Molecular Biology and Evolution

1 reference

Europe PubMed Central

7 August 2017

31

1 reference

Europe PubMed Central

7 August 2017

12

1 reference

Europe PubMed Central

7 August 2017

3095-3112

1 reference

Europe PubMed Central

7 August 2017

A structural phylogenetic map for chloroplast photosynthesis

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU252

21 January 2018

Why are plastid genomes retained in non-photosynthetic organisms?

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU252

21 January 2018

The plastid genome of the mycoheterotrophic Corallorhiza striata (Orchidaceae) is in the relatively early stages of degradation

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU252

21 January 2018

Molecular evolution of rbcL in the mycoheterotrophic coralroot orchids (Corallorhiza Gagnebin, Orchidaceae).

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU252

21 January 2018

The isochore organization of the human genome

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU252

21 January 2018

The evolutionary ecology of myco-heterotrophy

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU252

21 January 2018

Recent loss of plastid-encoded ndh genes within Erodium (Geraniaceae).

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU252

21 January 2018

Plastid genome evolution across the genus Cuscuta (Convolvulaceae): two clades within subgenus Grammica exhibit extensive gene loss

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU252

21 January 2018

Plastid genome evolution in mycoheterotrophic Ericaceae.

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU252

21 January 2018

Loss of all plastid ndh genes in Gnetales and conifers: extent and evolutionary significance for the seed plant phylogeny.

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU252

21 January 2018

The chlorophyll-containing orchid Corallorhiza trifida derives little carbon through photosynthesis.

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU252

21 January 2018

The Chloroplast Genome of Phalaenopsis aphrodite (Orchidaceae): Comparative Analysis of Evolutionary Rate with that of Grasses and Its Phylogenetic Implications

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU252

21 January 2018

GenomeVx: simple web-based creation of editable circular chromosome maps.

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU252

21 January 2018

Rampant gene loss in the underground orchid Rhizanthella gardneri highlights evolutionary constraints on plastid genomes

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU252

21 January 2018

MUSCLE: multiple sequence alignment with high accuracy and high throughput

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU252

21 January 2018

Regulation of proton flow and ATP synthesis in chloroplasts

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU252

21 January 2018

A complete sequence and transcriptomic analyses of date palm (Phoenix dactylifera L.) mitochondrial genome

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU252

21 January 2018

Phylogenies and the Comparative Method

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU252

21 January 2018

Relationships and evolution of matK in a group of leafless orchids (Corallorhiza and Corallorhizinae; Orchidaceae: Epidendroideae).

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU252

21 January 2018

Complete DNA sequences of the plastid genomes of two parasitic flowering plant species, Cuscuta reflexa and Cuscuta gronovii

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU252

21 January 2018

The genome sequence of the filamentous fungus Neurospora crassa

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU252

21 January 2018

GC content evolution in coding regions of angiosperm genomes: a unifying hypothesis.

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU252

21 January 2018

TNT, a free program for phylogenetic analysis

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU252

21 January 2018

The two RNA polymerases encoded by the nuclear and the plastid compartments transcribe distinct groups of genes in tobacco plastids

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU252

21 January 2018

GEIGER: investigating evolutionary radiations

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU252

21 January 2018

Against the traffic: The first evidence for mitochondrial DNA transfer into the plastid genome.

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU252

21 January 2018

Structure, function and regulation of plant photosystem I.

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU252

21 January 2018

Genome sequence and gene compaction of the eukaryote parasite Encephalitozoon cuniculi

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU252

21 January 2018

MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU252

21 January 2018

From chloroplasts to "cryptic" plastids: evolution of plastid genomes in parasitic plants.

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU252

21 January 2018

Common themes in the genome strategies of pathogens

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU252

21 January 2018

The biology of myco-heterotrophic ('saprophytic') plants

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU252

21 January 2018

Physiological ecology of mycoheterotrophy.

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU252

21 January 2018

The transcription machineries of plant mitochondria and chloroplasts: Composition, function, and regulation.

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU252

21 January 2018

The plastid genome of mycoheterotrophic monocot Petrosavia stellaris exhibits both gene losses and multiple rearrangements

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU252

21 January 2018

Sequencing and analysis of plastid genome in mycoheterotrophic orchid Neottia nidus-avis.

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU252

21 January 2018

Functional characterization of the thylakoid Ndh complex phosphorylation by site-directed mutations in the ndhF gene

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU252

21 January 2018

Plastid ndh genes in plant evolution

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU252

21 January 2018

Systematics and plastid genome evolution of the cryptically photosynthetic parasitic plant genus Cuscuta (Convolvulaceae).

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU252

21 January 2018

Phylogeny and origins of holoparasitism in Orobanchaceae

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU252

21 January 2018

Possible loss of the chloroplast genome in the parasitic flowering plant Rafflesia lagascae (Rafflesiaceae)

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU252

21 January 2018

Microbial minimalism: genome reduction in bacterial pathogens

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU252

21 January 2018

Genomic Minimalism in the Early Diverging Intestinal Parasite Giardia lamblia

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU252

21 January 2018

Do nonasterid holoparasitic flowering plants have plastid genomes?

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU252

21 January 2018

NGS QC Toolkit: a toolkit for quality control of next generation sequencing data

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU252

21 January 2018

The plastid genome of Najas flexilis: adaptation to submersed environments is accompanied by the complete loss of the NDH complex in an aquatic angiosperm

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU252

21 January 2018

The chequered history of the development and use of simultaneous equations for the accurate determination of chlorophylls a and b.

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU252

21 January 2018

A systematically improved high quality genome and transcriptome of the human blood fluke Schistosoma mansoni

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU252

21 January 2018

The evolution and expression of RBCL in holoparasitic sister-genera Harveya and Hyobanche (Orobanchaceae).

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU252

21 January 2018

MACSE: Multiple Alignment of Coding SEquences accounting for frameshifts and stop codons

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU252

21 January 2018

A Nonparametric Approach to Estimating Divergence Times in the Absence of Rate Constancy

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU252

21 January 2018

A plastid without a genome: evidence from the nonphotosynthetic green algal genus Polytomella.

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU252

21 January 2018

RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU252

21 January 2018

Horizontal transfer of DNA from the mitochondrial to the plastid genome and its subsequent evolution in milkweeds (apocynaceae).

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU252

21 January 2018

Building a model: developing genomic resources for common milkweed (Asclepias syriaca) with low coverage genome sequencing.

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU252

21 January 2018

MEGA6: Molecular Evolutionary Genetics Analysis version 6.0

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU252

21 January 2018

The genomes of four tapeworm species reveal adaptations to parasitism

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU252

21 January 2018

The evolution of parasitism in plants

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU252

21 January 2018

Mechanisms of functional and physical genome reduction in photosynthetic and nonphotosynthetic parasitic plants of the broomrape family

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU252

21 January 2018

Disproportional plastome-wide increase of substitution rates and relaxed purifying selection in genes of carnivorous Lentibulariaceae

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU252

21 January 2018

The evolution of the plastid chromosome in land plants: gene content, gene order, gene function

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU252

21 January 2018

Transcriptomes of the parasitic plant family Orobanchaceae reveal surprising conservation of chlorophyll synthesis

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU252

21 January 2018

The effect of relaxed functional constraints on the photosynthetic gene rbcL in photosynthetic and nonphotosynthetic parasitic plants.

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU252

21 January 2018

Function and evolution of a minimal plastid genome from a nonphotosynthetic parasitic plant

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU252

21 January 2018

Complete chloroplast genome of Oncidium Gower Ramsey and evaluation of molecular markers for identification and breeding in Oncidiinae

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU252

21 January 2018

Automatic annotation of organellar genomes with DOGMA

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU252

21 January 2018

Complete chloroplast genome of the genus Cymbidium: lights into the species identification, phylogenetic implications and population genetic analyses

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU252

21 January 2018

PAML 4: phylogenetic analysis by maximum likelihood

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU252

21 January 2018

Fungal genomics and pathogenicity

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU252

21 January 2018

Velvet: algorithms for de novo short read assembly using de Bruijn graphs

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU252

21 January 2018

The ectomycorrhizal specialist orchid Corallorhiza trifida is a partial myco-heterotroph.

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU252

21 January 2018

SequenceMatrix: concatenation software for the fast assembly of multi-gene datasets with character set and codon information

1 reference

20 May 2022

https://opencitations.net/index/coci/api/v1/citations/10.1111/J.1096-0031.2010.00329.X

Identifiers

10.1093/MOLBEV/MSU252

1 reference

Europe PubMed Central

7 August 2017

1 reference

Europe PubMed Central

7 August 2017

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