(Q35261686)

7 August 2017

Large-scale whole genome sequencing of M. tuberculosis provides insights into transmission in a high prevalence area (English)

1 reference

Mycobacterium tuberculosis

7 August 2017

0 references

0 references

whole genome sequencing

1 reference

based on heuristic

inferred from title

author

José Afonso Guerra-assunção

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25732036%20AND%20SRC:MED&resulttype=core&format=json

4 June 2020

Amelia Crampin

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25732036%20AND%20SRC:MED&resulttype=core&format=json

4 June 2020

Rein M G J Houben

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25732036%20AND%20SRC:MED&resulttype=core&format=json

4 June 2020

Taane G Clark

14

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25732036%20AND%20SRC:MED&resulttype=core&format=json

4 June 2020

author name string

T Mzembe

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25732036%20AND%20SRC:MED&resulttype=core&format=json

4 June 2020

K Mallard

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25732036%20AND%20SRC:MED&resulttype=core&format=json

4 June 2020

F Coll

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25732036%20AND%20SRC:MED&resulttype=core&format=json

4 June 2020

P Khan

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25732036%20AND%20SRC:MED&resulttype=core&format=json

4 June 2020

L Banda

8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25732036%20AND%20SRC:MED&resulttype=core&format=json

4 June 2020

A Chiwaya

9

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25732036%20AND%20SRC:MED&resulttype=core&format=json

4 June 2020

R P A Pereira

10

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25732036%20AND%20SRC:MED&resulttype=core&format=json

4 June 2020

R McNerney

11

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25732036%20AND%20SRC:MED&resulttype=core&format=json

4 June 2020

P E M Fine

12

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25732036%20AND%20SRC:MED&resulttype=core&format=json

4 June 2020

J Parkhill

13

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25732036%20AND%20SRC:MED&resulttype=core&format=json

4 June 2020

J R Glynn

15

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25732036%20AND%20SRC:MED&resulttype=core&format=json

4 June 2020

language of work or name

English

0 references

publication date

3 March 2015

1 reference

7 August 2017

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25732036%20AND%20SRC:MED&resulttype=core&format=json

4 June 2020

volume

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25732036%20AND%20SRC:MED&resulttype=core&format=json

Recurrence due to relapse or reinfection with Mycobacterium tuberculosis: a whole-genome sequencing approach in a large, population-based cohort with a high HIV infection prevalence and active follow-up

4 June 2020

cites work

1 reference

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Whole-genome sequencing to detect recent transmission of Mycobacterium tuberculosis in settings with a high burden of tuberculosis

27 July 2018

1 reference

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Assessment of Mycobacterium tuberculosis transmission in Oxfordshire, UK, 2007-12, with whole pathogen genome sequences: an observational study

27 July 2018

1 reference

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Mycobacterium tuberculosis mutation rate estimates from different lineages predict substantial differences in the emergence of drug-resistant tuberculosis

27 July 2018

1 reference

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Association between Mycobacterium tuberculosis lineage and time to sputum culture conversion.

27 July 2018

1 reference

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Mycobacterial lineages causing pulmonary and extrapulmonary tuberculosis, Ethiopia.

27 July 2018

1 reference

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Control of (multi)drug resistance and tuberculosis incidence over 23 years in the context of a well-supported tuberculosis programme in rural Malawi

27 July 2018

1 reference

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Use of whole genome sequencing to determine the microevolution of Mycobacterium tuberculosis during an outbreak

27 July 2018

1 reference

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Inferring patient to patient transmission of Mycobacterium tuberculosis from whole genome sequencing data

27 July 2018

1 reference

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Whole-genome sequencing to delineate Mycobacterium tuberculosis outbreaks: a retrospective observational study

27 July 2018

1 reference

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SpolPred: rapid and accurate prediction of Mycobacterium tuberculosis spoligotypes from short genomic sequences

27 July 2018

1 reference

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Epidemiologic consequences of microvariation in Mycobacterium tuberculosis

27 July 2018

1 reference

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Host-pathogen coevolution in human tuberculosis

27 July 2018

1 reference

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Human macrophage responses to clinical isolates from the Mycobacterium tuberculosis complex discriminate between ancient and modern lineages

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4384740

Molecular detection of mixed infections of Mycobacterium tuberculosis strains in sputum samples from patients in Karonga District, Malawi

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4384740

Changes in Mycobacterium tuberculosis genotype families over 20 years in a population-based study in Northern Malawi

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4384740

Functional genetic diversity among Mycobacterium tuberculosis complex clinical isolates: delineation of conserved core and lineage-specific transcriptomes during intracellular survival

27 July 2018

1 reference

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Human immunodeficiency virus increases the risk of tuberculosis due to recent re-infection in individuals with latent infection

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4384740

Possible underlying mechanisms for successful emergence of the Mycobacterium tuberculosis Beijing genotype strains

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4384740

Genotyping of genetically monomorphic bacteria: DNA sequencing in Mycobacterium tuberculosis highlights the limitations of current methodologies.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4384740

The Sequence Alignment/Map format and SAMtools

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4384740

HIV and the risk of tuberculosis due to recent transmission over 12 years in Karonga District, Malawi

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4384740

Major Mycobacterium tuberculosis lineages associate with patient country of origin

27 July 2018

1 reference

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Progression to active tuberculosis, but not transmission, varies by Mycobacterium tuberculosis lineage in The Gambia

27 July 2018

1 reference

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Relationship between Mycobacterium tuberculosis genotype and the clinical phenotype of pulmonary and meningeal tuberculosis

27 July 2018

1 reference

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Genomic interrogation of ancestral Mycobacterium tuberculosis from south India

27 July 2018

1 reference

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Association between Mycobacterium tuberculosis Beijing/W lineage strain infection and extrathoracic tuberculosis: Insights from epidemiologic and clinical characterization of the three principal genetic groups of M. tuberculosis clinical isolates

27 July 2018

1 reference

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Mycobacterium tuberculosis Beijing genotype, northern Malawi

27 July 2018

1 reference

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Strain identification of Mycobacterium tuberculosis by DNA fingerprinting: recommendations for a standardized methodology

27 July 2018

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The epidemiology of tuberculosis in San Francisco. A population-based study using conventional and molecular methods

27 July 2018

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Whole genome sequencing analysis of intrapatient microevolution in Mycobacterium tuberculosis: potential impact on the inference of tuberculosis transmission.

27 July 2018

1 reference

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Clade-specific virulence patterns of Mycobacterium tuberculosis complex strains in human primary macrophages and aerogenically infected mice

26 September 2018

1 reference

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Ethnicity and mycobacterial lineage as determinants of tuberculosis disease phenotype

26 September 2018

1 reference

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SITVITWEB--a publicly available international multimarker database for studying Mycobacterium tuberculosis genetic diversity and molecular epidemiology

26 September 2018

1 reference

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Relationship between Mycobacterium tuberculosis phylogenetic lineage and clinical site of tuberculosis.

26 September 2018

1 reference

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Reconstructing disease outbreaks from genetic data: a graph approach

26 September 2018

1 reference

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What has Karonga taught us? Tuberculosis studied over three decades.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4384740

Beijing/W genotype Mycobacterium tuberculosis and drug resistance

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4384740

The importance of recent infection with Mycobacterium tuberculosis in an area with high HIV prevalence: a long-term molecular epidemiological study in Northern Malawi

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4384740

26 September 2018

Identifiers

DOI

10.7554/ELIFE.05166

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25732036%20AND%20SRC:MED&resulttype=core&format=json

4 June 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25732036%20AND%20SRC:MED&resulttype=core&format=json

4 June 2020

1 reference