(Q35264670)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25844118%20AND%20SRC:MED&resulttype=core&format=json

4 March 2020

title

Abiotic stress and genome dynamics: specific genes and transposable elements response to iron excess in rice (English)

1 reference

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4 March 2020

1

1 reference

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4 March 2020

Leomar G Woyann

6

1 reference

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4 March 2020

Nathalie Picault

11

1 reference

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4 March 2020

Oliveira, A.C. de

1 reference

ORCID Public Data File 2021

author name string

Antonio Costa de Oliveira

2

1 reference

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4 March 2020

Cristian Chaparro

3

1 reference

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4 March 2020

Luciano C da Maia

4

1 reference

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4 March 2020

Daniel R Farias

5

1 reference

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4 March 2020

Claudete C Mistura

7

1 reference

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4 March 2020

Adriana P Soares-Bresolin

8

1 reference

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4 March 2020

Christel Llauro

9

1 reference

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4 March 2020

Olivier Panaud

10

1 reference

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4 March 2020

publication date

25 February 2015

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4 March 2020

1 reference

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4 March 2020

volume

8

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4 March 2020

page(s)

13

1 reference

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Creative Commons Attribution 4.0 International

4 March 2020

copyright license

start time

25 February 2015

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

Toward understanding transcriptional regulatory networks in abiotic stress responses and tolerance in rice

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Comparative functional analysis of six drought-responsive promoters in transgenic rice

12 July 2018

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Expression and signal regulation of the alternative oxidase genes under abiotic stresses

12 July 2018

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Nicotianamine synthase overexpression positively modulates iron homeostasis-related genes in high iron rice

12 July 2018

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Dissecting plant iron homeostasis under short and long-term iron fluctuations.

12 July 2018

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Comparative genomic paleontology across plant kingdom reveals the dynamics of TE-driven genome evolution

12 July 2018

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Vacuolar membrane transporters OsVIT1 and OsVIT2 modulate iron translocation between flag leaves and seeds in rice

12 July 2018

1 reference

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Retrotransposons control fruit-specific, cold-dependent accumulation of anthocyanins in blood oranges

12 July 2018

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Iron uptake, translocation, and regulation in higher plants

12 July 2018

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12 July 2018

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KEGG for integration and interpretation of large-scale molecular data sets

12 July 2018

1 reference

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The OsNRAMP1 iron transporter is involved in Cd accumulation in rice

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4385019

A rice phenolic efflux transporter is essential for solubilizing precipitated apoplasmic iron in the plant stele.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4385019

Molecular and functional analyses of COPT/Ctr-type copper transporter-like gene family in rice

12 July 2018

1 reference

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ZINC-INDUCED FACILITATOR-LIKE family in plants: lineage-specific expansion in monocotyledons and conserved genomic and expression features among rice (Oryza sativa) paralogs

12 July 2018

1 reference

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Transpositional landscape of the rice genome revealed by paired-end mapping of high-throughput re-sequencing data.

12 July 2018

1 reference

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Ethylene is involved in the regulation of iron homeostasis by regulating the expression of iron-acquisition-related genes in Oryza sativa

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4385019

Long-range function of an intergenic retrotransposon

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4385019

Identification of Fe-excess-induced genes in rice shoots reveals a WRKY transcription factor responsive to Fe, drought and senescence

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4385019

Regulation of iron homeostasis in Arabidopsis thaliana by the clock regulator time for coffee.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4385019

Functional analysis of transcription factors in Arabidopsis

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4385019

Molecular characterization of a rice mutator-phenotype derived from an incompatible cross-pollination reveals transgenerational mobilization of multiple transposable elements and extensive epigenetic instability

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4385019

The MIQE guidelines: minimum information for publication of quantitative real-time PCR experiments

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4385019

Metal movement within the plant: contribution of nicotianamine and yellow stripe 1-like transporters

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4385019

Identification and localisation of the rice nicotianamine aminotransferase gene OsNAAT1 expression suggests the site of phytosiderophore synthesis in rice

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4385019

Functional analysis of a NAC-type transcription factor OsNAC6 involved in abiotic and biotic stress-responsive gene expression in rice

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4385019

Mining iron: iron uptake and transport in plants

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4385019

Patterns in grass genome evolution

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4385019

Repeated recruitment of LTR retrotransposons as promoters by the anti-apoptotic locus NAIP during mammalian evolution

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4385019

RetrOryza: a database of the rice LTR-retrotransposons

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4385019

NMPP: a user-customized NimbleGen microarray data processing pipeline

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4385019

Rice plants take up iron as an Fe3+-phytosiderophore and as Fe2+.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4385019

OsZIP4, a novel zinc-regulated zinc transporter in rice

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4385019

The map-based sequence of the rice genome

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4385019

Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4385019

Evidence for the presence of ferritin in plant mitochondria.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4385019

The glutathione system as a stress marker in plant ecophysiology: is a stress-response concept valid?

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4385019

Analyses of LTR-retrotransposon structures reveal recent and rapid genomic DNA loss in rice

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4385019

THE FUNCTIONS AND REGULATION OF GLUTATHIONE S-TRANSFERASES IN PLANTS.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4385019

Computational approaches to identify promoters and cis-regulatory elements in plant genomes

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4385019

12 July 2018

Iron stress in plants

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4385019

Plant transposable elements: where genetics meets genomics

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4385019

A Draft Sequence of the Rice Genome (Oryza sativa L. ssp. indica)

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4385019

Analysis of Relative Gene Expression Data Using Real-Time Quantitative PCR and the 2−ΔΔCT Method

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4385019

Regulation of plant ferritin synthesis: how and why.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4385019

Gene ontology: tool for the unification of biology

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4385019

The ZIP family of metal transporters

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4385019

12 July 2018

Plant retrotransposons

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4385019

A 13-bp cis-regulatory element in the LTR promoter of the tobacco retrotransposon Tto1 is involved in responsiveness to tissue culture, wounding, methyl jasmonate and fungal elicitors

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4385019

Plant cis-acting regulatory DNA elements (PLACE) database: 1999

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4385019

Cloning and characterization of the OsNramp family from Oryza sativa, a new family of membrane proteins possibly implicated in the transport of metal ions

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4385019

The role of cytochrome P450 monooxygenases in plant-insect interactions

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4385019

Retrotransposons of rice involved in mutations induced by tissue culture

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4385019

Plant bZIP proteins gather at ACGT elements

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4385019

Binding site requirements for pea nuclear protein factor GT-1 correlate with sequences required for light-dependent transcriptional activation of the rbcS-3A gene

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4385019

Basic local alignment search tool

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4385019

Classification and characterization of the rice alpha-amylase multigene family

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4385019

A receptor-like protein RMC is involved in regulation of iron acquisition in rice

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4385019

Phylogenetic relationships and selective pressure on gene families related to iron homeostasis in land plants

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4385019

Identification of a cis-acting element of ART1, a C2H2-type zinc-finger transcription factor for aluminum tolerance in rice

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4385019

Nitric oxide acts downstream of auxin to trigger root ferric-chelate reductase activity in response to iron deficiency in Arabidopsis.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4385019

Identification of putative target genes to manipulate Fe and Zn concentrations in rice grains.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4385019

The tissue expression pattern of the AtGRP5 regulatory region is controlled by a combination of positive and negative elements.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4385019

Rice metal-nicotianamine transporter, OsYSL2, is required for the long-distance transport of iron and manganese

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4385019

Cytochrome P450 monooxygenases as reporters for circadian-regulated pathways

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4385019

OsFRDL1 is a citrate transporter required for efficient translocation of iron in rice

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4385019

The senescence-induced staygreen protein regulates chlorophyll degradation

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4385019

Molecular analyses of the metallothionein gene family in rice (Oryza sativa L.).

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4385019

5'CATGCAT-3' Elements Modulate the Expression of Glycinin Genes

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4385019

Oxidative stress and phytochelatin characterisation in bread wheat exposed to cadmium excess

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4385019

OsYSL2 is a rice metal-nicotianamine transporter that is regulated by iron and expressed in the phloem

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4385019

Dimerization and DNA binding of auxin response factors

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4385019

Cytochrome P450s in Plants

26 September 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12284-015-0045-6

Iron homeostasis related genes in rice

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12284-015-0045-6

Distinct physiological responses of two rice cultivars subjected to iron toxicity under field conditions

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12284-015-0045-6

Differential regulation of the two rice ferritin genes (OsFER1 and OsFER2)

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12284-015-0045-6

Arsenic stress in rice: redox consequences and regulation by iron

21 January 2018

1 reference

12 December 2020

Physiological and transcriptome analysis of iron and phosphorus interaction in rice seedlings

1 reference

12 December 2020

Combined transcriptomic and physiological approaches reveal strong differences between short- and long-term response of rice (Oryza sativa) to iron toxicity.

1 reference

12 December 2020

Induced expression of oryzain alpha gene encoding a cysteine proteinase under stress conditions

1 reference

12 December 2020

Zinc deficiency-inducible OsZIP8 encodes a plasma membrane-localized zinc transporter in rice

1 reference

12 December 2020

AOX1c, a novel rice gene for alternative oxidase; comparison with rice AOX1a and AOX1b

1 reference

12 December 2020

Interaction between the bHLH transcription factor FIT and ETHYLENE INSENSITIVE3/ETHYLENE INSENSITIVE3-LIKE1 reveals molecular linkage between the regulation of iron acquisition and ethylene signaling in Arabidopsis

1 reference

12 December 2020

Over-expression of OsIRT1 leads to increased iron and zinc accumulations in rice

1 reference

12 December 2020

Abiotic stress in rice. An "omic" approach

1 reference

12 December 2020

Expression profiling of Oryza sativa metal homeostasis genes in different rice cultivars using a cDNA macroarray

1 reference

12 December 2020

Identification of an active LTR retrotransposon in rice.

1 reference

12 December 2020

10.1186/S12284-015-0045-6

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25844118%20AND%20SRC:MED&resulttype=core&format=json

Dimensions Publication ID

4 March 2020

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25844118%20AND%20SRC:MED&resulttype=core&format=json

4 March 2020

PubMed publication ID

25844118

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25844118%20AND%20SRC:MED&resulttype=core&format=json