(Q35282603)

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Hidden in plain sight: subtle effects of the 8-oxoguanine lesion on the structure, dynamics, and thermodynamics of a 15-base pair oligodeoxynucleotide duplex

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scholarly article

1 reference

Europe PubMed Central

PubMed publication ID

7 August 2017

Hidden in plain sight: subtle effects of the 8-oxoguanine lesion on the structure, dynamics, and thermodynamics of a 15-base pair oligodeoxynucleotide duplex (English)

1 reference

Europe PubMed Central

PubMed publication ID

7 August 2017

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author name string

Charisse M Crenshaw

1

1 reference

Europe PubMed Central

PubMed publication ID

7 August 2017

Jacqueline E Wade

2

1 reference

Europe PubMed Central

PubMed publication ID

7 August 2017

Haribabu Arthanari

3

1 reference

Europe PubMed Central

PubMed publication ID

7 August 2017

Dominique Frueh

4

1 reference

Europe PubMed Central

PubMed publication ID

7 August 2017

Benjamin F Lane

5

1 reference

Europe PubMed Central

PubMed publication ID

7 August 2017

Megan E Núñez

6

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Europe PubMed Central

PubMed publication ID

7 August 2017

language of work or name

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publication date

8 September 2011

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Europe PubMed Central

PubMed publication ID

7 August 2017

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Europe PubMed Central

PubMed publication ID

7 August 2017

50

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Europe PubMed Central

PubMed publication ID

7 August 2017

39

1 reference

Europe PubMed Central

PubMed publication ID

7 August 2017

8463-8477

1 reference

Europe PubMed Central

PubMed publication ID

7 August 2017

describes a project that uses

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Europe PubMed Central

11 June 2022

https://www.ebi.ac.uk/europepmc/webservices/rest/PMC3188433/fullTextXML

based on heuristic

inferred from PubMed Central ID database lookup

Characterization of DNA with an 8-oxoguanine modification

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3188433

27 July 2018

Encounter and extrusion of an intrahelical lesion by a DNA repair enzyme

1 reference

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27 July 2018

Circular dichroism and conformational polymorphism of DNA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3188433

27 July 2018

Electronic structure of DNA--unique properties of 8-oxoguanosine

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3188433

27 July 2018

Structure of the E. coli DNA Glycosylase AlkA Bound to the Ends of Duplex DNA: A System for the Structure Determination of Lesion-Containing DNA

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3188433

27 July 2018

Influence of magnesium ions on spontaneous opening of DNA base pairs

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3188433

27 July 2018

Enzymatic capture of an extrahelical thymine in the search for uracil in DNA

1 reference

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27 July 2018

Base-excision repair of oxidative DNA damage

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3188433

27 July 2018

Computational approaches for investigating base flipping in oligonucleotides

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3188433

27 July 2018

Dynamic opening of DNA during the enzymatic search for a damaged base

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3188433

27 July 2018

Error-prone replication of oxidatively damaged DNA by a high-fidelity DNA polymerase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3188433

27 July 2018

A mechanistic perspective on the chemistry of DNA repair glycosylases

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3188433

27 July 2018

Recognition of base mismatches in DNA by 5,6-chrysenequinone diimine complexes of rhodium(III): a proposed mechanism for preferential binding in destabilized regions of the double helix

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3188433

27 July 2018

A versatile mismatch recognition agent: specific cleavage of a plasmid DNA at a single base mispair

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3188433

27 July 2018

DNA oxidation matters: the HPLC-electrochemical detection assay of 8-oxo-deoxyguanosine and 8-oxo-guanine

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3188433

27 July 2018

Site-specific dynamics in DNA: experiments

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3188433

27 July 2018

How do DNA repair proteins locate damaged bases in the genome?

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3188433

27 July 2018

Base-catalysis of imino proton exchange in DNA: effects of catalyst upon DNA structure and dynamics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3188433

27 July 2018

NMRPipe: a multidimensional spectral processing system based on UNIX pipes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3188433

27 July 2018

Crystal structure of a DNA duplex containing 8-hydroxydeoxyguanine-adenine base pairs

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3188433

27 July 2018

X-ray structure of a DNA decamer containing 7,8-dihydro-8-oxoguanine

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3188433

27 July 2018

15N nuclear magnetic resonance studies on the tautomerism of 8-hydroxy-2'-deoxyguanosine, 8-hydroxyguanosine, and other C8-substituted guanine nucleosides.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3188433

27 July 2018

NMR studies of a DNA containing 8-hydroxydeoxyguanosine

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3188433

27 July 2018

Insertion of specific bases during DNA synthesis past the oxidation-damaged base 8-oxodG

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3188433

27 July 2018

Circular dichroism spectroscopy of DNA

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3188433

27 July 2018

A-DNA in solution as studied by diverse approaches

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3188433

27 July 2018

Molecular dynamics simulation of 8-oxoguanine containing DNA fragments reveals altered hydration and ion binding patterns

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3188433

26 September 2018

Impact of the oxidized guanine lesion spiroiminodihydantoin on the conformation and thermodynamic stability of a 15-mer DNA duplex

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3188433

26 September 2018

A base-excision DNA-repair protein finds intrahelical lesion bases by fast sliding in contact with DNA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3188433

26 September 2018

Electron trap for DNA-bound repair enzymes: a strategy for DNA-mediated signaling

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3188433

26 September 2018

NMR imino proton exchange experiments on duplex DNA primarily monitor the opening of purine bases.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3188433

26 September 2018

Dynamic behavior of DNA base pairs containing 8-oxoguanine

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3188433

26 September 2018

Structure of a repair enzyme interrogating undamaged DNA elucidates recognition of damaged DNA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3188433

26 September 2018

8-Oxoguanine enhances bending of DNA that favors binding to glycosylases

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3188433

26 September 2018

The trapping of a spontaneously "flipped-out" base from double helical nucleic acids by host-guest complexation with beta-cyclodextrin: the intrinsic base-flipping rate constant for DNA and RNA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3188433

26 September 2018

First principles calculations of the tautomers and pK(a) values of 8-oxoguanine: implications for mutagenicity and repair

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3188433

26 September 2018

Molecular dynamics simulation of 7, 8-dihydro-8-oxoguanine DNA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3188433

26 September 2018

Influence of the oxidatively damaged adduct 8-oxodeoxyguanosine on the conformation, energetics, and thermodynamic stability of a DNA duplex.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3188433

26 September 2018

Complex local dynamics in DNA on the picosecond and nanosecond time scales

1 reference

https://pubmed.ncbi.nlm.nih.gov/21902242

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Flexibility and curvature of duplex DNA containing mismatched sites as a function of temperature

1 reference

https://pubmed.ncbi.nlm.nih.gov/21902242

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Probing the role of hydrogen bonds in the stability of base pairs in double-helical DNA

1 reference

https://pubmed.ncbi.nlm.nih.gov/21902242

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Oxidative Nucleobase Modifications Leading to Strand Scission

1 reference

https://pubmed.ncbi.nlm.nih.gov/21902242

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

NMR structural studies of the ionizing radiation adduct 7-hydro-8-oxodeoxyguanosine (8-oxo-7H-dG) opposite deoxyadenosine in a DNA duplex. 8-Oxo-7H-dG(syn).dA(anti) alignment at lesion site

1 reference

https://pubmed.ncbi.nlm.nih.gov/21902242

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Studies of base pair kinetics by NMR measurement of proton exchange

1 reference

https://pubmed.ncbi.nlm.nih.gov/21902242

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Chemistry of Glycosylases and Endonucleases Involved in Base-Excision Repair

1 reference

https://pubmed.ncbi.nlm.nih.gov/21902242

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A single mode of DNA base-pair opening drives imino proton exchange

1 reference

https://pubmed.ncbi.nlm.nih.gov/21902242

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

gamma-Ray footprinting and fluorescence polarization anisotropy of a 30-mer synthetic DNA fragment with one 2'-deoxy-7-hydro-8- oxoguanosine lesion

1 reference

https://pubmed.ncbi.nlm.nih.gov/21902242

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Assignment of the non-exchangeable proton resonances of d(C-G-C-G-A-A-T-T-C-G-C-G) using two-dimensional nuclear magnetic resonance methods

1 reference

https://pubmed.ncbi.nlm.nih.gov/21902242

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1021/BI201007T

1 reference

Europe PubMed Central

PubMed publication ID

7 August 2017

PMC publication ID

1 reference

Europe PubMed Central

PubMed publication ID

7 August 2017

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

7 August 2017

ResearchGate publication ID

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