(Q35549029)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25939354%20AND%20SRC:MED&resulttype=core&format=json

7 March 2020

title

DNA methylation in Arabidopsis has a genetic basis and shows evidence of local adaptation (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25939354%20AND%20SRC:MED&resulttype=core&format=json

7 March 2020

0 references

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25939354%20AND%20SRC:MED&resulttype=core&format=json

7 March 2020

Bjarni Vilhjalmsson

10

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25939354%20AND%20SRC:MED&resulttype=core&format=json

7 March 2020

Gunnar Rätsch

16

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25939354%20AND%20SRC:MED&resulttype=core&format=json

7 March 2020

Oliver Stegle

17

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25939354%20AND%20SRC:MED&resulttype=core&format=json

7 March 2020

Magnus Nordborg

19

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25939354%20AND%20SRC:MED&resulttype=core&format=json

7 March 2020

author name string

Pei Zhang

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25939354%20AND%20SRC:MED&resulttype=core&format=json

7 March 2020

Dazhe Meng

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25939354%20AND%20SRC:MED&resulttype=core&format=json

7 March 2020

Marie-Stanislas Remigereau

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25939354%20AND%20SRC:MED&resulttype=core&format=json

7 March 2020

Edward J Osborne

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25939354%20AND%20SRC:MED&resulttype=core&format=json

7 March 2020

Francesco Paolo Casale

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25939354%20AND%20SRC:MED&resulttype=core&format=json

7 March 2020

Philipp Drewe

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25939354%20AND%20SRC:MED&resulttype=core&format=json

7 March 2020

André Kahles

8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25939354%20AND%20SRC:MED&resulttype=core&format=json

7 March 2020

Geraldine Jean

9

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25939354%20AND%20SRC:MED&resulttype=core&format=json

7 March 2020

Joanna Jagoda

11

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25939354%20AND%20SRC:MED&resulttype=core&format=json

7 March 2020

Selen Irez

12

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25939354%20AND%20SRC:MED&resulttype=core&format=json

7 March 2020

Viktor Voronin

13

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25939354%20AND%20SRC:MED&resulttype=core&format=json

7 March 2020

Qiang Song

14

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25939354%20AND%20SRC:MED&resulttype=core&format=json

7 March 2020

Quan Long

15

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25939354%20AND%20SRC:MED&resulttype=core&format=json

7 March 2020

Richard M Clark

18

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25939354%20AND%20SRC:MED&resulttype=core&format=json

7 March 2020

language of work or name

English

0 references

publication date

5 May 2015

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25939354%20AND%20SRC:MED&resulttype=core&format=json

7 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25939354%20AND%20SRC:MED&resulttype=core&format=json

7 March 2020

volume

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25939354%20AND%20SRC:MED&resulttype=core&format=json

7 March 2020

page(s)

e05255

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25939354%20AND%20SRC:MED&resulttype=core&format=json

Century-scale methylome stability in a recently diverged Arabidopsis thaliana lineage

7 March 2020

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4413256

Natural CMT2 variation is associated with genome-wide methylation changes and temperature seasonality

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4413256

Evolution of DNA methylation patterns in the Brassicaceae is driven by differences in genome organization

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4413256

Keeping it local: evidence for positive selection in Swedish Arabidopsis thaliana

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4413256

Genomic distribution of H3K9me2 and DNA methylation in a maize genome

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4413256

Estimating heritability of complex traits from genome-wide association studies using IBS-based Haseman-Elston regression

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4413256

How a retrotransposon exploits the plant's heat stress response for its activation.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4413256

RNA silencing is resistant to low-temperature in grapevine

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4413256

Inheritance patterns and stability of DNA methylation variation in maize near-isogenic lines

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4413256

Non-CG methylation patterns shape the epigenetic landscape in Arabidopsis.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4413256

NextGenMap: fast and accurate read mapping in highly polymorphic genomes

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4413256

Estimating and interpreting FST: the impact of rare variants

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4413256

Massive genomic variation and strong selection in Arabidopsis thaliana lines from Sweden

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4413256

Passive and active DNA methylation and the interplay with genetic variation in gene regulation

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4413256

The Arabidopsis nucleosome remodeler DDM1 allows DNA methyltransferases to access H1-containing heterochromatin

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4413256

Q(ST)-F(ST) comparisons: evolutionary and ecological insights from genomic heterogeneity.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4413256

Comprehensive analysis of silencing mutants reveals complex regulation of the Arabidopsis methylome.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4413256

BSmooth: from whole genome bisulfite sequencing reads to differentially methylated regions

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4413256

methylKit: a comprehensive R package for the analysis of genome-wide DNA methylation profiles

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4413256

Advanced methylome analysis after bisulfite deep sequencing: an example in Arabidopsis.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4413256

DDR complex facilitates global association of RNA polymerase V to promoters and evolutionarily young transposons

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4413256

Bis-SNP: combined DNA methylation and SNP calling for Bisulfite-seq data

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4413256

An efficient multi-locus mixed-model approach for genome-wide association studies in structured populations.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4413256

Adaptation to climate across the Arabidopsis thaliana genome

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4413256

Differential expression analysis for sequence count data

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4413256

R/qtl: high-throughput multiple QTL mapping

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4413256

ChIPpeakAnno: a Bioconductor package to annotate ChIP-seq and ChIP-chip data

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4413256

Repitools: an R package for the analysis of enrichment-based epigenomic data

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4413256

Genome-wide association study of 107 phenotypes in Arabidopsis thaliana inbred lines.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4413256

Variance component model to account for sample structure in genome-wide association studies

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4413256

H2A.Z-containing nucleosomes mediate the thermosensory response in Arabidopsis.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4413256

BSMAP: whole genome bisulfite sequence MAPping program

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4413256

A stepwise pathway for biogenesis of 24-nt secondary siRNAs and spreading of DNA methylation

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4413256

Recombination and linkage disequilibrium in Arabidopsis thaliana.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4413256

Epigenetic natural variation in Arabidopsis thaliana

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4413256

R/qtl: QTL mapping in experimental crosses

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4413256

A DNA methyltransferase homolog with a chromodomain exists in multiple polymorphic forms in Arabidopsis

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4413256

Patterns of population epigenomic diversity.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4413256

Body-methylated genes in Arabidopsis thaliana are functionally important and evolve slowly.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4413256

An siRNA pathway prevents transgenerational retrotransposition in plants subjected to stress.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4413256

Epigenetic regulation of repetitive elements is attenuated by prolonged heat stress in Arabidopsis.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4413256

Genome-wide analysis of Arabidopsis thaliana DNA methylation uncovers an interdependence between methylation and transcription.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4413256

Requirement of CHROMOMETHYLASE3 for maintenance of CpXpG methylation

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4413256

RNA-Seq Read Alignments with PALMapper

26 September 2018

1 reference

Crossref

https://api.crossref.org/works/10.7554%2FELIFE.05255

Epigenetic and genetic influences on DNA methylation variation in maize populations

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.7554%2FELIFE.05255

DNA METHYLATION IN PLANTS

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25939354

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.7554/ELIFE.05255

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25939354%20AND%20SRC:MED&resulttype=core&format=json

7 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25939354%20AND%20SRC:MED&resulttype=core&format=json

7 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25939354%20AND%20SRC:MED&resulttype=core&format=json