(Q35561962)

8 August 2017

Model-driven mapping of transcriptional networks reveals the circuitry and dynamics of virulence regulation (English)

1 reference

8 August 2017

0 references

cAMP-dependent protein kinase regulator

0 references

cyclin C

0 references

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hypothetical protein, variant 2

0 references

hypothetical protein, variant 1

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Putative Zn2-Cys6 zinc-finger transcription factor

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transcription factor

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nuclear protein

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transcriptional regulatory protein

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transcriptional repressor NF-X1

0 references

Fungal Zn(2)-Cys(6) binuclear cluster domain protein

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hepatocyte nuclear factor

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transcriptional regulator

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transcriptional regulator, variant

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transcriptional regulator Nrg1

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transcription factor

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Transcriptional activator HAP2, putative

0 references

Putative Zn2-Cys6 zinc-finger transcription factor

0 references

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transcriptional activator

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transcriptional activator, variant

0 references

glucose repression regulatory protein TUP1

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GDP-mannose transporter 1

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Fork head protein homolog 1, putative

0 references

Fork head protein homolog 1, putative

0 references

transcriptional activator hap5

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Adenylate cyclase

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DNA binding protein, putative

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specific RNA polymerase II transcription factor

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iron regulator 1, variant

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iron regulator 1

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CMGC/MAPK/P38 protein kinase

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GATA family transcription factor

0 references

transcriptional adapter 2-alpha

0 references

Fungal Zn(2)-Cys(6) binuclear cluster domain protein

0 references

RNA polymerase II transcription factor

0 references

Centromere DNA-binding protein complex CBF3 subunit B, putative

0 references

CAP-Gly protein 1

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CAP-Gly protein 1

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RNA polymerase II transcription factor

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pH-response transcription factor pacC/RIM101

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Pre-rRNA-processing protein FHL1, putative

0 references

author

Michael L Skowyra

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25644834%20AND%20SRC:MED&resulttype=core&format=json

1 June 2020

author name string

Ezekiel J Maier

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25644834%20AND%20SRC:MED&resulttype=core&format=json

1 June 2020

Brian C Haynes

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25644834%20AND%20SRC:MED&resulttype=core&format=json

1 June 2020

Stacey R Gish

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25644834%20AND%20SRC:MED&resulttype=core&format=json

1 June 2020

Zhuo A Wang

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25644834%20AND%20SRC:MED&resulttype=core&format=json

1 June 2020

Alyssa L Marulli

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25644834%20AND%20SRC:MED&resulttype=core&format=json

1 June 2020

Tamara L Doering

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25644834%20AND%20SRC:MED&resulttype=core&format=json

1 June 2020

Michael R Brent

8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25644834%20AND%20SRC:MED&resulttype=core&format=json

1 June 2020

language of work or name

1 reference

2 February 2015

1 reference

8 August 2017

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25644834%20AND%20SRC:MED&resulttype=core&format=json

1 June 2020

volume

25

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25644834%20AND%20SRC:MED&resulttype=core&format=json

1 June 2020

issue

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25644834%20AND%20SRC:MED&resulttype=core&format=json

1 June 2020

page(s)

690-700

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25644834%20AND%20SRC:MED&resulttype=core&format=json

Cryptococcus neoformans and Cryptococcus gattii, the etiologic agents of cryptococcosis

1 June 2020

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4417117

Cryptococcus neoformans dual GDP-mannose transporters and their role in biology and virulence.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4417117

Analysis of the genome and transcriptome of Cryptococcus neoformans var. grubii reveals complex RNA expression and microevolution leading to virulence attenuation

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4417117

Efficient phagocytosis and laccase activity affect the outcome of HIV-associated cryptococcosis

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4417117

The tools for virulence of Cryptococcus neoformans

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4417117

Cryptococcus neoformans: historical curiosity to modern pathogen

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4417117

The Cryptococcus neoformans Rim101 transcription factor directly regulates genes required for adaptation to the host

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4417117

ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4417117

Toward an integrated model of capsule regulation in Cryptococcus neoformans

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4417117

Synthesis and assembly of fungal melanin

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4417117

ScerTF: a comprehensive database of benchmarked position weight matrices for Saccharomyces species

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4417117

A flucytosine-responsive Mbp1/Swi4-like protein, Mbs1, plays pleiotropic roles in antifungal drug resistance, stress response, and virulence of Cryptococcus neoformans

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4417117

A major role for capsule-independent phagocytosis-inhibitory mechanisms in mammalian infection by Cryptococcus neoformans.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4417117

Systematic discovery of nonobvious human disease models through orthologous phenotypes

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4417117

Estimation of the current global burden of cryptococcal meningitis among persons living with HIV/AIDS

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4417117

Systematic genetic analysis of virulence in the human fungal pathogen Cryptococcus neoformans

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4417117

How Saccharomyces responds to nutrients

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4417117

Genetic reconstruction of a functional transcriptional regulatory network

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4417117

The pathogenic fungus Cryptococcus neoformans expresses two functional GDP-mannose transporters with distinct expression patterns and roles in capsule synthesis

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4417117

Transcription factor Nrg1 mediates capsule formation, stress response, and pathogenesis in Cryptococcus neoformans.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4417117

Pde1 phosphodiesterase modulates cyclic AMP levels through a protein kinase A-mediated negative feedback loop in Cryptococcus neoformans

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4417117

Cryptococcus neoformans {alpha} strains preferentially disseminate to the central nervous system during coinfection

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4417117

Specialization of the HOG pathway and its impact on differentiation and virulence of Cryptococcus neoformans

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4417117

UGD1, encoding the Cryptococcus neoformans UDP-glucose dehydrogenase, is essential for growth at 37 degrees C and for capsule biosynthesis

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4417117

Transcriptional regulatory code of a eukaryotic genome

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4417117

Experimental modulation of capsule size in Cryptococcus neoformans

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4417117

Biosynthesis of UDP-GlcA, a key metabolite for capsular polysaccharide synthesis in the pathogenic fungus Cryptococcus neoformans

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4417117

A molecular timescale of eukaryote evolution and the rise of complex multicellular life

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4417117

Tissue oxygen tension and brain sensitivity to hypoxia

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4417117

Functional cloning and characterization of a UDP- glucuronic acid decarboxylase: the pathogenic fungus Cryptococcus neoformans elucidates UDP-xylose synthesis

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4417117

Cyclic AMP-dependent protein kinase controls virulence of the fungal pathogen Cryptococcus neoformans

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4417117

Large-scale genetic perturbations reveal regulatory networks and an abundance of gene-specific repressors.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4417117

Mapping functional transcription factor networks from gene expression data

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4417117

The cAMP/Protein Kinase A Pathway and Virulence in Cryptococcus neoformans.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4417117

The Cryptococcus neoformans capsule: a sword and a shield

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4417117

Regulatory diversity of TUP1 in Cryptococcus neoformans

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4417117

The fatal fungal outbreak on Vancouver Island is characterized by enhanced intracellular parasitism driven by mitochondrial regulation

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4417117

Systematic capsule gene disruption reveals the central role of galactose metabolism on Cryptococcus neoformans virulence.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4417117

Iron regulation of the major virulence factors in the AIDS-associated pathogen Cryptococcus neoformans

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4417117

Split marker transformation increases homologous integration frequency in Cryptococcus neoformans.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4417117

A new hexose transporter from Cryptococcus neoformans: molecular cloning and structural and functional characterization

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4417117

Fast and systematic genome-wide discovery of conserved regulatory elements using a non-alignment based approach

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4417117

A CLC‐type chloride channel gene is required for laccase activity and virulence in Cryptococcus neoformans

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4417117

BioProspector: discovering conserved DNA motifs in upstream regulatory regions of co-expressed genes.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4417117

26 September 2018

Identifiers

DOI

10.1101/GR.184101.114

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25644834%20AND%20SRC:MED&resulttype=core&format=json

1 June 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25644834%20AND%20SRC:MED&resulttype=core&format=json

1 June 2020

1 reference