(Q35618403)

9 August 2017

title

Binding of phage Phi29 architectural protein p6 to the viral genome: evidence for topological restriction of the phage linear DNA. (English)

1 reference

9 August 2017

author name string

Víctor González-Huici

1

1 reference

9 August 2017

Martín Alcorlo

2

1 reference

9 August 2017

Margarita Salas

3

1 reference

9 August 2017

José M Hermoso

4

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9 August 2017

language of work or name

English

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publication date

1 July 2004

1 reference

9 August 2017

published in

Nucleic Acids Research

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9 August 2017

volume

32

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9 August 2017

issue

11

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9 August 2017

page(s)

3493-3502

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Genome wide, supercoiling-dependent in vivo binding of a viral protein involved in DNA replication and transcriptional control

9 August 2017

cites work

1 reference

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27 July 2018

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27 July 2018

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Priming the nucleosome: a role for HMGB proteins?

27 July 2018

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The bacterial regulatory protein H-NS--a versatile modulator of nucleic acid structures

27 July 2018

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Discovery of two novel families of proteins that are proposed to interact with prokaryotic SMC proteins, and characterization of the Bacillus subtilis family members ScpA and ScpB

27 July 2018

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Cell cycle-dependent localization of two novel prokaryotic chromosome segregation and condensation proteins in Bacillus subtilis that interact with SMC protein

27 July 2018

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27 July 2018

Phi29 family of phages

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Large-scale monitoring of pleiotropic regulation of gene expression by the prokaryotic nucleoid-associated protein, H-NS.

27 July 2018

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SMC proteins in bacteria: condensation motors for chromosome segregation?

27 July 2018

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HMG1 and 2, and related 'architectural' DNA-binding proteins

27 July 2018

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Characterization of the bacteriophage phi29-encoded protein p16.7: a membrane protein involved in phage DNA replication

27 July 2018

1 reference

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Dynamic relocalization of phage phi 29 DNA during replication and the role of the viral protein p16.7.

27 July 2018

1 reference

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Mapping chromosomal proteins in vivo by formaldehyde-crosslinked-chromatin immunoprecipitation

27 July 2018

1 reference

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Closing the ring: links between SMC proteins and chromosome partitioning, condensation, and supercoiling

27 July 2018

1 reference

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Bacillus subtilis LrpC is a sequence-independent DNA-binding and DNA-bending protein which bridges DNA.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=443543

Functional interactions between a phage histone-like protein and a transcriptional factor in regulation of phi29 early-late transcriptional switch

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=443543

Growth phase-dependent variation in protein composition of the Escherichia coli nucleoid

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=443543

Structural maintenance of chromosomes (SMC) proteins: conserved molecular properties for multiple biological functions

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=443543

13S condensin actively reconfigures DNA by introducing global positive writhe: implications for chromosome condensation

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=443543

SMC-mediated chromosome mechanics: a conserved scheme from bacteria to vertebrates?

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=443543

Polymerization of bacteriophage phi 29 replication protein p1 into protofilament sheets

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=443543

Characterization of a prokaryotic SMC protein involved in chromosome partitioning

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=443543

Association of the histone-like protein HBsu with the nucleoid of Bacillus subtilis

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=443543

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=443543

Superhelical path of the DNA in the nucleoprotein complex that activates the initiation of phage phi 29 DNA replication

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=443543

New concepts in protein-DNA recognition: sequence-directed DNA bending and flexibility.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=443543

Thermodynamics and kinetics of co-operative protein-nucleic acid binding. I. General aspects of analysis of data

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=443543

Fluorescence studies of the complex formation between the gene 5 protein of bacteriophage M13 and polynucleotides

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=443543

Supercoils in prokaryotic DNA restrained in vivo

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=443543

Chromosomes in living Escherichia coli cells are segregated into domains of supercoiling

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=443543

Selective Replication of Bacteriophage φ29 Deoxyribonucleic Acid in 6-( p -Hydroxyphenylazo)-Uracil-Treated Bacillus subtilis

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=443543

Theoretical aspects of DNA-protein interactions: co-operative and non-co-operative binding of large ligands to a one-dimensional homogeneous lattice.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=443543

Sequence periodicities in chicken nucleosome core DNA.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=443543

Cooperative and noncooperative binding of protein ligands to nucleic acid lattices: experimental approaches to the determination of thermodynamic parameters.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=443543

Overproduction and purification of protein P6 of Bacillus subtilis phage phi 29: role in the initiation of DNA replication

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=443543

Interaction of the bacteriophage phi 29 protein p6 with double-stranded DNA.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=443543

Histonelike proteins of bacteria

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=443543

Modulation of in vivo and in vitro transcription of bacteriophage phi 29 early genes

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=443543

Replication of phage phi 29 DNA in vitro: role of the viral protein p6 in initiation and elongation

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=443543

In vitro transcription of bacteriophage phi 29 DNA: inhibition of early promoters by the viral replication protein p6.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=443543

Drug-induced relaxation of supercoiled plasmid DNA in Bacillus subtilis and induction of the SOS response

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=443543

Signals at the bacteriophage phi 29 DNA replication origins required for protein p6 binding and activity

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=443543

Characterization of a new prokaryotic transcriptional activator and its DNA recognition site

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=443543

A novel nucleoprotein complex at a replication origin

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=443543

E.coli MukB protein involved in chromosome partition forms a homodimer with a rod-and-hinge structure having DNA binding and ATP/GTP binding activities

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=443543

Opening of the replication origin of Escherichia coli by DnaA protein with protein HU or IHF.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=443543

Physical map of bacteriophage phi29 DNA.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=443543

Bacillus subtilis phage phi29. Characterization of gene products and functions

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=443543

Assembly of Bacillus subtilis Phage Phi29. 2. Mutants in the Cistrons Coding for the Non-structural Proteins

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=443543

The push-pull mechanism of bacteriophage Ø29 DNA injection

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=443543

Escherichia coli prereplication complex assembly is regulated by dynamic interplay among Fis, IHF and DnaA.

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=443543

Control of transcription by nucleoid proteins

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=443543

Escherichia coli cell cycle control genes affect chromosome superhelicity

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=443543

Initiation of bacteriophage phi29 DNA replication in vivo: assembly of a membrane-associated multiprotein complex

25 September 2018

1 reference

12 December 2020

Phage phi29 protein p6 is in a monomer-dimer equilibrium that shifts to higher association states at the millimolar concentrations found in vivo

1 reference

12 December 2020

Two types of localization of the DNA-binding proteins within the Escherichia coli nucleoid

1 reference

12 December 2020

Sequence requirements for protein-primed initiation and elongation of phage O29 DNA replication

1 reference

12 December 2020

A possible role for L24 of Bacillus subtilis in nucleoid organization and segregation

1 reference

12 December 2020

Repression of bacteriophage phi 29 early promoter C2 by viral protein p6 is due to impairment of closed complex

1 reference

12 December 2020

DNA replication in bacteriophage ø29: the requirement of a viral-specfic product for association of ø29 DNA with the cell membrane of Bacillus amyloliquefaciens

1 reference

12 December 2020

Suppressor-sensitive mutants and genetic map of Bacillus subtilis bacteriophage phi 29

1 reference

12 December 2020

Transcription activation and repression by interaction of a regulator with the alpha subunit of RNA polymerase: the model of phage phi 29 protein p4

1 reference

12 December 2020

Bend induced by the phage phi 29 transcriptional activator in the viral late promoter is required for activation

1 reference

12 December 2020

Complex Formation between Phage φ29 Single-stranded DNA Binding Protein and DNA

1 reference

12 December 2020

A genetic approach to the identification of functional amino acids in protein p6 of Bacillus subtilis phage phi 29

1 reference

12 December 2020

Identification and characterization of a bacterial chromosome partitioning site

1 reference

12 December 2020

Identifiers

DOI

10.1093/NAR/GKH668

1 reference

9 August 2017

1 reference

9 August 2017

1 reference