(Q35647756)

9 August 2017

title

Theoretical analysis of the role of chromatin interactions in long-range action of enhancers and insulators (English)

1 reference

9 August 2017

author name string

Swagatam Mukhopadhyay

1

1 reference

9 August 2017

Paul Schedl

2

1 reference

9 August 2017

Vasily M Studitsky

3

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9 August 2017

Anirvan M Sengupta

4

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9 August 2017

language of work or name

English

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publication date

28 November 2011

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9 August 2017

number of pages

6

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Proceedings of the National Academy of Sciences of the United States of America

inferred from page(s)

published in

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9 August 2017

volume

108

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9 August 2017

issue

50

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9 August 2017

page(s)

19919-19924

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Mechanism of chromosomal boundary action: roadblock, sink, or loop?

9 August 2017

cites work

1 reference

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The interaction of NSBP1/HMGN5 with nucleosomes in euchromatin counteracts linker histone-mediated chromatin compaction and modulates transcription.

12 July 2018

1 reference

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Analysis of distant communication on defined chromatin templates in vitro.

12 July 2018

1 reference

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Global analysis of the insulator binding protein CTCF in chromatin barrier regions reveals demarcation of active and repressive domains

12 July 2018

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Chromatin insulators: regulatory mechanisms and epigenetic inheritance

12 July 2018

1 reference

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Subdiffraction multicolor imaging of the nuclear periphery with 3D structured illumination microscopy

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3250180

Enhancer blocking and transvection at the Drosophila apterous locus

12 July 2018

1 reference

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An evaluation of 3C-based methods to capture DNA interactions

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3250180

The nucleosome surface regulates chromatin compaction and couples it with transcriptional repression

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3250180

A charged and contoured surface on the nucleosome regulates chromatin compaction

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3250180

Activation-dependent intrachromosomal interactions formed by the TNF gene promoter and two distal enhancers

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3250180

Computational modeling of the chromatin fiber

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3250180

We gather together: insulators and genome organization

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3250180

Regulation of GREB1 transcription by estrogen receptor alpha through a multipartite enhancer spread over 20 kb of upstream flanking sequences

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3250180

The three-dimensional structure of human interphase chromosomes is related to the transcriptome map.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3250180

Chromosome Conformation Capture Carbon Copy (5C): a massively parallel solution for mapping interactions between genomic elements

12 July 2018

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12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3250180

Insulators: exploiting transcriptional and epigenetic mechanisms

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3250180

Flexible histone tails in a new mesoscopic oligonucleosome model

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3250180

Study of long-distance functional interactions between Su(Hw) insulators that can regulate enhancer-promoter communication in Drosophila melanogaster

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3250180

Remote control of gene transcription

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3250180

The dynamics of histone H1 function in chromatin

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3250180

Long-range compaction and flexibility of interphase chromatin in budding yeast analyzed by high-resolution imaging techniques.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3250180

Boundary elements and nuclear organization

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3250180

Global nature of dynamic protein-chromatin interactions in vivo: three-dimensional genome scanning and dynamic interaction networks of chromatin proteins

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3250180

Scanning Human Gene Deserts for Long-Range Enhancers

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3250180

Communication over a large distance: enhancers and insulators

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3250180

The functional analysis of insulator interactions in the Drosophila embryo

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3250180

Structures and interactions of the core histone tail domains

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3250180

Protecting against promiscuity: the regulatory role of insulators

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3250180

Looping and interaction between hypersensitive sites in the active beta-globin locus

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3250180

Long-range chromatin regulatory interactions in vivo

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3250180

Capturing chromosome conformation

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3250180

Chromatin insulators and boundaries: effects on transcription and nuclear organization

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3250180

Preferential interaction of the core histone tail domains with linker DNA.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3250180

Heterochromatin formation in mammalian cells: interaction between histones and HP1 proteins

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3250180

Pulling a single chromatin fiber reveals the forces that maintain its higher-order structure

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3250180

Enhancer blocking by the Drosophila gypsy insulator depends upon insulator anatomy and enhancer strength.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3250180

Distant liaisons: long-range enhancer-promoter interactions in Drosophila.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3250180

Structure, dynamics, and function of chromatin in vitro

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3250180

Crystal structure of the nucleosome core particle at 2.8 A resolution

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3250180

The role of insulator elements in defining domains of gene expression.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3250180

Polymer models for interphase chromosomes

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3250180

Estimating genomic distance from DNA sequence location in cell nuclei by a random walk model

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3250180

Going the distance: a current view of enhancer action

12 July 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1103845108

Chromatin insulators. Keeping enhancers under control.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1103845108

A tale of tails: how histone tails mediate chromatin compaction in different salt and linker histone environments

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1103845108

Linker histone H1 per se can induce three-dimensional folding of chromatin fiber.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1103845108

Major role of the histones H3-H4 in the folding of the chromatin fiber

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22123989

12 December 2020

inferred from PubMed ID database lookup

Multicolor 3D Fluorescence In Situ Hybridization for Imaging Interphase Chromosomes

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22123989

12 December 2020

inferred from PubMed ID database lookup

Pseudoknots in a homopolymer

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22123989

12 December 2020

inferred from PubMed ID database lookup

Identifiers

DOI

10.1073/PNAS.1103845108

1 reference

9 August 2017

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1 reference

9 August 2017

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