(Q35676599)

9 August 2017

1 reference

title

ChIP-chip: considerations for the design, analysis, and application of genome-wide chromatin immunoprecipitation experiments (English)

1 reference

9 August 2017

Michael J Buck

1

1 reference

PubMed ID

14986705

9 August 2017

Jason D Lieb

series ordinal

2

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PubMed ID

14986705

9 August 2017

language of work or name

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1 March 2004

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9 August 2017

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9 August 2017

83

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9 August 2017

349-360

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9 August 2017

3

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Promoter-specific binding of Rap1 revealed by genome-wide maps of protein-DNA association

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In vivo protein-protein and protein-DNA crosslinking for genomewide binding microarray

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Location analysis of DNA-bound proteins at the whole-genome level: untangling transcriptional regulatory networks.

7 January 2021

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Mapping chromosomal proteins in vivo by formaldehyde-crosslinked-chromatin immunoprecipitation

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Genomewide histone acetylation microarrays

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Chromatin immunoprecipitation: a tool for studying histone acetylation and transcription factor binding.

7 January 2021

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Identification of unknown target genes of human transcription factors using chromatin immunoprecipitation

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Characterizing transcription factor binding sites using formaldehyde crosslinking and immunoprecipitation

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Genome-wide binding map of the histone deacetylase Rpd3 in yeast

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Genomic binding sites of the yeast cell-cycle transcription factors SBF and MBF

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Genome-wide location and function of DNA binding proteins

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Transcriptional regulatory networks in Saccharomyces cerevisiae

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A global transcriptional regulatory role for c-Myc in Burkitt's lymphoma cells

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Complex transcriptional circuitry at the G1/S transition in Saccharomyces cerevisiae

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GATA-1 binding sites mapped in the beta-globin locus by using mammalian chIp-chip analysis

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Isolating human transcription factor targets by coupling chromatin immunoprecipitation and CpG island microarray analysis

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Identification of novel pRb binding sites using CpG microarrays suggests that E2F recruits pRb to specific genomic sites during S phase

7 January 2021

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Genomewide demarcation of RNA polymerase II transcription units revealed by physical fractionation of chromatin

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Methylation of histone H3 Lys 4 in coding regions of active genes

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Genome-wide location and regulated recruitment of the RSC nucleosome-remodeling complex.

7 January 2021

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The tandem affinity purification (TAP) method: a general procedure of protein complex purification

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A method for the rapid sequence-independent amplification of microdissected chromosomal material

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In vivo footprinting of a muscle specific enhancer by ligation mediated PCR.

7 January 2021

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Development and validation of a T7 based linear amplification for genomic DNA

7 January 2021

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Expression profiling using cDNA microarrays

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Amine-modified random primers to label probes for DNA microarrays

7 January 2021

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An algorithm for finding protein-DNA binding sites with applications to chromatin-immunoprecipitation microarray experiments

7 January 2021

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Genome-wide distribution of ORC and MCM proteins in S. cerevisiae: high-resolution mapping of replication origins.

7 January 2021

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Global mapping of meiotic recombination hotspots and coldspots in the yeast Saccharomyces cerevisiae

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Microarray deacetylation maps determine genome-wide functions for yeast histone deacetylases

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Number of CpG islands and genes in human and mouse

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Purification of CpG islands using a methylated DNA binding column

7 January 2021

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Comparison and meta-analysis of microarray data: from the bench to the computer desk.

7 January 2021

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Fundamentals of cDNA microarray data analysis

7 January 2021

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Microarray data normalization and transformation

7 January 2021

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Microarray standard data set and figures of merit for comparing data processing methods and experiment designs

7 January 2021

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Practical approaches to analyzing results of microarray experiments

7 January 2021

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The transcriptional activity of human Chromosome 22

7 January 2021

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Large-scale transcriptional activity in chromosomes 21 and 22

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Assembly of microarrays for genome-wide measurement of DNA copy number

7 January 2021

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Gene expression analysis using oligonucleotide arrays produced by maskless photolithography

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Gene expression analysis by massively parallel signature sequencing (MPSS) on microbead arrays

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A new non-linear normalization method for reducing variability in DNA microarray experiments

7 January 2021

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Normalization for cDNA microarray data: a robust composite method addressing single and multiple slide systematic variation

7 January 2021

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Issues in cDNA microarray analysis: quality filtering, channel normalization, models of variations and assessment of gene effects

7 January 2021

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Feature extraction and normalization algorithms for high-density oligonucleotide gene expression array data

7 January 2021

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Signaling and circuitry of multiple MAPK pathways revealed by a matrix of global gene expression profiles

7 January 2021

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10.1016/J.YGENO.2003.11.004

7 January 2021

Identifiers

DOI

1 reference

9 August 2017

1 reference

PubMed ID

14986705