(Q35746855)

10 August 2017

title

Unexpected Diversity of Chloroplast Noncoding RNAs as Revealed by Deep Sequencing of the Arabidopsis Transcriptome (English)

1 reference

10 August 2017

0 references

Amber M Hotto

1

1 reference

10 August 2017

Robert J Schmitz

2

1 reference

10 August 2017

Zhangjun Fei

3

1 reference

10 August 2017

Joseph R Ecker

4

1 reference

10 August 2017

David B Stern

5

1 reference

10 August 2017

language of work or name

1 reference

1 December 2011

1 reference

10 August 2017

1 reference

10 August 2017

volume

1

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10 August 2017

issue

7

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10 August 2017

page(s)

559-570

1 reference

A novel class of heat-responsive small RNAs derived from the chloroplast genome of Chinese cabbage (Brassica rapa).

10 August 2017

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12 July 2018

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12 July 2018

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Overaccumulation of the chloroplast antisense RNA AS5 is correlated with decreased abundance of 5S rRNA in vivo and inefficient 5S rRNA maturation in vitro

12 July 2018

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Knockout of the plastid RNase E leads to defective RNA processing and chloroplast ribosome deficiency.

12 July 2018

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Overexpression of a natural chloroplast-encoded antisense RNA in tobacco destabilizes 5S rRNA and retards plant growth

12 July 2018

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Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

12 July 2018

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Evidence for a major role of antisense RNAs in cyanobacterial gene regulation

12 July 2018

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Coding sequence targeting by MicC RNA reveals bacterial mRNA silencing downstream of translational initiation

12 July 2018

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Small RNA-induced differential degradation of the polycistronic mRNA iscRSUA

12 July 2018

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Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

12 July 2018

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Poly(A)-assisted RNA decay and modulators of RNA stability

12 July 2018

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Small regulatory non-coding RNAs in bacteria: physiology and mechanistic aspects

12 July 2018

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12 July 2018

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12 July 2018

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The challenge of regulation in a minimal photoautotroph: non-coding RNAs in Prochlorococcus

12 July 2018

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A 125 kDa RNase E/G-like protein is present in plastids and is essential for chloroplast development and autotrophic growth in Arabidopsis.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3276175

Role of Bacillus subtilis RNase J1 endonuclease and 5'-exonuclease activities in trp leader RNA turnover.

12 July 2018

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Highly integrated single-base resolution maps of the epigenome in Arabidopsis

12 July 2018

1 reference

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PNPase is a key player in the regulation of small RNAs that control the expression of outer membrane proteins

12 July 2018

1 reference

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Characterization of the role of ribonucleases in Salmonella small RNA decay

12 July 2018

1 reference

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Identification of small non-coding RNAs from mitochondria and chloroplasts

12 July 2018

1 reference

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Genome-wide in silico identification and analysis of cis natural antisense transcripts (cis-NATs) in ten species

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3276175

RNA-quality control by the exosome

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3276175

Relaxed transcription in Arabidopsis mitochondria is counterbalanced by RNA stability control mediated by polyadenylation and polynucleotide phosphorylase

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3276175

Natural antisense transcripts with coding capacity in Arabidopsis may have a regulatory role that is not linked to double-stranded RNA degradation

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3276175

An abundance of RNA regulators

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3276175

RNR1, a 3'-5' exoribonuclease belonging to the RNR superfamily, catalyzes 3' maturation of chloroplast ribosomal RNAs in Arabidopsis thaliana.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3276175

Genome-wide prediction and identification of cis-natural antisense transcripts in Arabidopsis thaliana

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3276175

Expression of complementary RNA from chloroplast transgenes affects editing efficiency of transgene and endogenous chloroplast transcripts

12 July 2018

1 reference

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GadY, a small-RNA regulator of acid response genes in Escherichia coli

12 July 2018

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Genome-wide insertional mutagenesis of Arabidopsis thaliana

12 July 2018

1 reference

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PNPase activity determines the efficiency of mRNA 3'-end processing, the degradation of tRNA and the extent of polyadenylation in chloroplasts

12 July 2018

1 reference

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Experimental RNomics: identification of 140 candidates for small non-messenger RNAs in the plant Arabidopsis thaliana

12 July 2018

1 reference

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Primer3 on the WWW for general users and for biologist programmers

12 July 2018

1 reference

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The two RNA polymerases encoded by the nuclear and the plastid compartments transcribe distinct groups of genes in tobacco plastids

12 July 2018

1 reference

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Sensitive detection of bacterial transcription initiation sites and differentiation from RNA processing sites in the pheromone-induced plasmid transfer system of Enterococcus faecalis

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3276175

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3276175

A subpopulation of spinach chloroplast tRNA genes does not require upstream promoter elements for transcription

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3276175

Control of plastid gene expression: 3' inverted repeats act as mRNA processing and stabilizing elements, but do not terminate transcription.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3276175

Analysis of promoter regions for the spinach chloroplast rbcL, atpB and psbA genes

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3276175

Sequence and transcriptional analysis of the barley ctDNA region upstream of psbD-psbC encoding trnK(UUU), rps16, trnQ(UUG), psbK, psbI, and trnS(GCU)

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3276175

Mutational analysis of Arabidopsis chloroplast polynucleotide phosphorylase reveals roles for both RNase PH core domains in polyadenylation, RNA 3'-end maturation and intron degradation.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3276175

Profiling of short RNAs during fleshy fruit development reveals stage-specific sRNAome expression patterns.

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3276175

A long antisense RNA in plant chloroplasts

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3276175

Abnormal physiological and molecular mutant phenotypes link chloroplast polynucleotide phosphorylase to the phosphorus deprivation response in Arabidopsis

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3276175

High diversity of plastidial promoters in Arabidopsis thaliana.

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3276175

Maturation of the 5' end of Bacillus subtilis 16S rRNA by the essential ribonuclease YkqC/RNase J1.

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3276175

A new in vitro translation system for non-radioactive assay from tobacco chloroplasts: effect of pre-mRNA processing on translation in vitro.

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3276175

Possible involvement of the 5'-flanking region and the 5'UTR of plastid accD gene in NEP-dependent transcription

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3276175

Antisense transcript and RNA processing alterations suppress instability of polyadenylated mRNA in chlamydomonas chloroplasts

25 September 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22384367

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identification of the transcription start site for the spinach chloroplast serine tRNA gene

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22384367

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1534/G3.111.000752

1 reference

10 August 2017

1 reference

10 August 2017

1 reference