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Complementarity between epsilon and phi sequences in pregenomic RNA influences hepatitis B virus replication efficiency.
scientific article published on 23 October 2006
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scholarly article
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Europe PubMed Central
PMCID
1850982
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17056086%20AND%20SRC:MED&resulttype=core&format=json
retrieved
21 December 2019
title
Complementarity between epsilon and phi sequences in pregenomic RNA influences hepatitis B virus replication efficiency
(English)
1 reference
stated in
Europe PubMed Central
PMCID
1850982
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17056086%20AND%20SRC:MED&resulttype=core&format=json
retrieved
21 December 2019
main subject
Hepatitis B virus
1 reference
based on heuristic
inferred from title
hepatitis B
1 reference
based on heuristic
inferred from title
author
Alan McLachlan
series ordinal
2
1 reference
stated in
Europe PubMed Central
PMCID
1850982
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17056086%20AND%20SRC:MED&resulttype=core&format=json
retrieved
21 December 2019
author name string
Claudia E Oropeza
series ordinal
1
1 reference
stated in
Europe PubMed Central
PMCID
1850982
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17056086%20AND%20SRC:MED&resulttype=core&format=json
retrieved
21 December 2019
language of work or name
English
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publication date
23 October 2006
1 reference
stated in
Europe PubMed Central
PMCID
1850982
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17056086%20AND%20SRC:MED&resulttype=core&format=json
retrieved
21 December 2019
number of pages
11
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inferred from page(s)
published in
Virology
1 reference
stated in
Europe PubMed Central
PubMed ID
17056086
retrieved
10 August 2017
volume
359
1 reference
stated in
Europe PubMed Central
PMCID
1850982
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17056086%20AND%20SRC:MED&resulttype=core&format=json
retrieved
21 December 2019
issue
2
1 reference
stated in
Europe PubMed Central
PMCID
1850982
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17056086%20AND%20SRC:MED&resulttype=core&format=json
retrieved
21 December 2019
page(s)
371-381
1 reference
stated in
Europe PubMed Central
PMCID
1850982
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17056086%20AND%20SRC:MED&resulttype=core&format=json
retrieved
21 December 2019
cites work
Base pairing between the 5' half of epsilon and a cis-acting sequence, phi, makes a contribution to the synthesis of minus-strand DNA for human hepatitis B virus
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1850982
retrieved
27 July 2018
Hepatitis B virus reverse transcriptase and epsilon RNA sequences required for specific interaction in vitro
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1850982
retrieved
27 July 2018
A pregenomic RNA sequence adjacent to DR1 and complementary to epsilon influences hepatitis B virus replication efficiency.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1850982
retrieved
27 July 2018
Mechanisms of inhibition of nuclear hormone receptor-dependent hepatitis B virus replication by hepatocyte nuclear factor 3beta.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1850982
retrieved
27 July 2018
The duck hepatitis B virus polymerase is activated by its RNA packaging signal, epsilon
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1850982
retrieved
27 July 2018
Insertions within epsilon affect synthesis of minus-strand DNA before the template switch for duck hepatitis B virus
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1850982
retrieved
27 July 2018
cis-Acting sequences in addition to donor and acceptor sites are required for template switching during synthesis of plus-strand DNA for duck hepatitis B virus
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1850982
retrieved
27 July 2018
Transcomplementation of nucleotide priming and reverse transcription between independently expressed TP and RT domains of the hepatitis B virus reverse transcriptase
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1850982
retrieved
27 July 2018
Sequence identity of the terminal redundancies on the minus-strand DNA template is necessary but not sufficient for the template switch during hepadnavirus plus-strand DNA synthesis
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1850982
retrieved
27 July 2018
Mutations within DR2 independently reduce the amount of both minus- and plus-strand DNA synthesized during duck hepatitis B virus replication.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1850982
retrieved
27 July 2018
A bulged region of the hepatitis B virus RNA encapsidation signal contains the replication origin for discontinuous first-strand DNA synthesis
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1850982
retrieved
27 July 2018
Hepadnavirus reverse transcription initiates within the stem-loop of the RNA packaging signal and employs a novel strand transfer.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1850982
retrieved
27 July 2018
Mutations in the epsilon sequences of human hepatitis B virus affect both RNA encapsidation and reverse transcription
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1850982
retrieved
27 July 2018
Novel mechanism for reverse transcription in hepatitis B viruses
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1850982
retrieved
27 July 2018
The encapsidation signal on the hepatitis B virus RNA pregenome forms a stem-loop structure that is critical for its function
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1850982
retrieved
27 July 2018
An RNA stem-loop structure directs hepatitis B virus genomic RNA encapsidation.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1850982
retrieved
27 July 2018
Nucleotide priming and reverse transcriptase activity of hepatitis B virus polymerase expressed in insect cells
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1850982
retrieved
27 July 2018
Role of RNA in enzymatic activity of the reverse transcriptase of hepatitis B viruses.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1850982
retrieved
27 July 2018
Site-specific RNA binding by a hepatitis B virus reverse transcriptase initiates two distinct reactions: RNA packaging and DNA synthesis.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1850982
retrieved
27 July 2018
Hepadnavirus P protein utilizes a tyrosine residue in the TP domain to prime reverse transcription.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1850982
retrieved
27 July 2018
Reverse transcription in hepatitis B viruses is primed by a tyrosine residue of the polymerase
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1850982
retrieved
27 July 2018
Transfer of the minus strand of DNA during hepadnavirus replication is not invariable but prefers a specific location.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1850982
retrieved
27 July 2018
Excretion of hepatitis B surface antigen particles from mouse cells transformed with cloned viral DNA.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1850982
retrieved
27 July 2018
Hepatitis B virus transcription in the infected liver
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1850982
retrieved
27 July 2018
Biochemical and genetic evidence for the hepatitis B virus replication strategy
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1850982
retrieved
27 July 2018
Replication strategy of human hepatitis B virus
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1850982
retrieved
27 July 2018
Initiation and termination of duck hepatitis B virus DNA synthesis during virus maturation
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1850982
retrieved
27 July 2018
Expression of hepatitis B virus surface and core antigens: influences of pre-S and precore sequences
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1850982
retrieved
27 July 2018
RNA transcripts of hepatitis B virus in hepatocellular carcinoma
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1850982
retrieved
27 July 2018
Molecular analysis of the function of direct repeats and a polypurine tract for plus-strand DNA priming in woodchuck hepatitis virus
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1850982
retrieved
27 July 2018
Analysis of hepatitis B virus transcripts in infected human livers
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1850982
retrieved
27 July 2018
Single-Step Method of RNA Isolation by Acid Guanidinium Thiocyanate–Phenol–Chloroform Extraction
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1850982
retrieved
27 July 2018
Evidence that a capped oligoribonucleotide is the primer for duck hepatitis B virus plus-strand DNA synthesis
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1850982
retrieved
27 July 2018
Preferred translation of human hepatitis B virus polymerase from core protein- but not from precore protein-specific transcript.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1850982
retrieved
27 July 2018
The P gene product of hepatitis B virus is required as a structural component for genomic RNA encapsidation
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1850982
retrieved
27 July 2018
A short cis-acting sequence is required for hepatitis B virus pregenome encapsidation and sufficient for packaging of foreign RNA.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1850982
retrieved
27 July 2018
Morphogenetic and regulatory effects of mutations in the envelope proteins of an avian hepadnavirus
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1850982
retrieved
27 July 2018
Sequence-independent RNA cleavages generate the primers for plus strand DNA synthesis in hepatitis B viruses: implications for other reverse transcribing elements
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1850982
retrieved
27 July 2018
Identification of a signal necessary for initiation of reverse transcription of the hepadnavirus genome
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1850982
retrieved
27 July 2018
Mutations affecting hepadnavirus plus-strand DNA synthesis dissociate primer cleavage from translocation and reveal the origin of linear viral DNA.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1850982
retrieved
27 July 2018
Polymerase gene products of hepatitis B viruses are required for genomic RNA packaging as well as for reverse transcription
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1850982
retrieved
27 July 2018
The reverse transcriptase of hepatitis B virus acts as a protein primer for viral DNA synthesis
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1850982
retrieved
27 July 2018
Hepadnaviral assembly is initiated by polymerase binding to the encapsidation signal in the viral RNA genome
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1850982
retrieved
27 July 2018
Nucleotide sequence of the hepatitis B virus genome (subtype ayw) cloned in E. coli
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1850982
retrieved
27 July 2018
DNA sequencing with chain-terminating inhibitors
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1850982
retrieved
27 July 2018
Transcriptional regulation of hepatitis B virus by nuclear hormone receptors is a critical determinant of viral tropism
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1850982
retrieved
25 September 2018
Formation of a functional hepatitis B virus replication initiation complex involves a major structural alteration in the RNA template.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1850982
retrieved
25 September 2018
Evidence for activation of the hepatitis B virus polymerase by binding of its RNA template.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1850982
retrieved
25 September 2018
RNA sequences controlling the initiation and transfer of duck hepatitis B virus minus-strand DNA.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1850982
retrieved
25 September 2018
Hepatitis B virus contains protein attached to the 5' terminus of its complete DNA strand
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1850982
retrieved
25 September 2018
Formation of the pool of covalently closed circular viral DNA in hepadnavirus-infected cells
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1850982
retrieved
25 September 2018
Hepatitis B virus RNA transcripts and DNA in chronic liver disease
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1850982
retrieved
25 September 2018
Sequences 5' to the polyadenylation signal mediate differential poly(A) site use in hepatitis B viruses
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1850982
retrieved
25 September 2018
Identifiers
DOI
10.1016/J.VIROL.2006.08.036
1 reference
stated in
Europe PubMed Central
PMCID
1850982
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17056086%20AND%20SRC:MED&resulttype=core&format=json
retrieved
21 December 2019
PMCID
1850982
1 reference
stated in
Europe PubMed Central
PMCID
1850982
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17056086%20AND%20SRC:MED&resulttype=core&format=json
retrieved
21 December 2019
PubMed ID
17056086
1 reference
stated in
Europe PubMed Central
PMCID
1850982
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17056086%20AND%20SRC:MED&resulttype=core&format=json
retrieved
21 December 2019
ResearchGate publication ID
6740018
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