(Q35786071)

English

Homology modeling of major intrinsic proteins in rice, maize and Arabidopsis: comparative analysis of transmembrane helix association and aromatic/arginine selectivity filters

scientific article published on 19 April 2007

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scholarly article

1 reference

Europe PubMed Central

10 August 2017

Homology modeling of major intrinsic proteins in rice, maize and Arabidopsis: comparative analysis of transmembrane helix association and aromatic/arginine selectivity filters (English)

1 reference

Europe PubMed Central

10 August 2017

transmembrane protein

0 references

author name string

Anjali Bansal

1

1 reference

Europe PubMed Central

10 August 2017

Ramasubbu Sankararamakrishnan

2

1 reference

Europe PubMed Central

10 August 2017

language of work or name

1 reference

based on heuristic

inferred from title

publication date

19 April 2007

1 reference

Europe PubMed Central

10 August 2017

BMC Structural Biology

1 reference

Europe PubMed Central

10 August 2017

7

1 reference

Europe PubMed Central

10 August 2017

27

1 reference

Europe PubMed Central

10 August 2017

https://scigraph.springernature.com/pub.10.1186/1472-6807-7-27

0 references

Functional aquaporin diversity in plants

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1866351

12 July 2018

A silicon transporter in rice

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1866351

12 July 2018

Point mutations in the aromatic/arginine region in aquaporin 1 allow passage of urea, glycerol, ammonia, and protons

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1866351

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1866351

12 July 2018

Structural basis for conductance by the archaeal aquaporin AqpM at 1.68 A.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1866351

12 July 2018

Structural mechanism of plant aquaporin gating

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1866351

12 July 2018

Crystal structure of AqpZ tetramer reveals two distinct Arg-189 conformations associated with water permeation through the narrowest constriction of the water-conducting channel.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1866351

12 July 2018

The map-based sequence of the rice genome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1866351

12 July 2018

What makes an aquaporin a glycerol channel? A comparative study of AqpZ and GlpF.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1866351

12 July 2018

The dynamics and energetics of water permeation and proton exclusion in aquaporins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1866351

12 July 2018

Conversion of aquaporin 6 from an anion channel to a water-selective channel by a single amino acid substitution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1866351

12 July 2018

InterPro, progress and status in 2005

1 reference

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12 July 2018

The channel architecture of aquaporin 0 at a 2.2-A resolution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1866351

12 July 2018

High resolution crystal structure of human Rab9 GTPase: a novel antiviral drug target

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1866351

12 July 2018

Aquaporin-0 membrane junctions reveal the structure of a closed water pore

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1866351

12 July 2018

Helix packing moments reveal diversity and conservation in membrane protein structure.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1866351

12 July 2018

AQUAPORINS AND WATER PERMEABILITY OF PLANT MEMBRANES.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1866351

12 July 2018

Architecture and selectivity in aquaporins: 2.5 a X-ray structure of aquaporin Z

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1866351

12 July 2018

Selectivity and conductance among the glycerol and water conducting aquaporin family of channels

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1866351

12 July 2018

Aquaporin water channels: molecular mechanisms for human diseases

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1866351

12 July 2018

Urea transport by nitrogen-regulated tonoplast intrinsic proteins in Arabidopsis.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1866351

12 July 2018

A graph-theory algorithm for rapid protein side-chain prediction

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1866351

12 July 2018

The TIGR rice genome annotation resource: annotating the rice genome and creating resources for plant biologists

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1866351

12 July 2018

Control of the selectivity of the aquaporin water channel family by global orientational tuning

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1866351

12 July 2018

Comparison of helix interactions in membrane and soluble alpha-bundle proteins.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1866351

12 July 2018

A Draft Sequence of the Rice Genome (Oryza sativa L. ssp. japonica)

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1866351

12 July 2018

A Draft Sequence of the Rice Genome (Oryza sativa L. ssp. indica)

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1866351

12 July 2018

A new subfamily of major intrinsic proteins in plants.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1866351

12 July 2018

Structural basis of water-specific transport through the AQP1 water channel

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1866351

12 July 2018

Water permeation across biological membranes: mechanism and dynamics of aquaporin-1 and GlpF.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1866351

12 July 2018

The complete set of genes encoding major intrinsic proteins in Arabidopsis provides a framework for a new nomenclature for major intrinsic proteins in plants

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1866351

12 July 2018

The Calpha ---H...O hydrogen bond: a determinant of stability and specificity in transmembrane helix interactions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1866351

12 July 2018

Aquaporins constitute a large and highly divergent protein family in maize

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1866351

12 July 2018

Structure of a glycerol-conducting channel and the basis for its selectivity

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1866351

12 July 2018

T-Coffee: A novel method for fast and accurate multiple sequence alignment

1 reference

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12 July 2018

The role of aquaporins in cellular and whole plant water balance

1 reference

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12 July 2018

The refined crystal structure of Drosophila lebanonensis alcohol dehydrogenase at 1.9 A resolution

1 reference

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12 July 2018

Evaluation of comparative protein structure modeling by MODELLER-3.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1866351

12 July 2018

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1866351

12 July 2018

HOLE: a program for the analysis of the pore dimensions of ion channel structural models

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1866351

12 July 2018

Comparative protein modelling by satisfaction of spatial restraints

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1866351

12 July 2018

A mutation data matrix for transmembrane proteins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1866351

12 July 2018

Accurate modeling of protein conformation by automatic segment matching

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1866351

12 July 2018

Distinct transport selectivity of two structural subclasses of the nodulin-like intrinsic protein family of plant aquaglyceroporin channels

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1866351

25 September 2018

Novel type aquaporin SIPs are mainly localized to the ER membrane and show cell-specific expression in Arabidopsis thaliana.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1866351

25 September 2018

MIPDB: a relational database dedicated to MIP family proteins.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1866351

25 September 2018

Tonoplast intrinsic proteins AtTIP2;1 and AtTIP2;3 facilitate NH3 transport into the vacuole.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1866351

25 September 2018

Structural determinants of proton blockage in aquaporins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1866351

25 September 2018

Aquaporin homologues in plants and mammals transport ammonia

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1866351

25 September 2018

Homology modeling of representative subfamilies of Arabidopsis major intrinsic proteins. Classification based on the aromatic/arginine selectivity filter

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1866351

25 September 2018

Homology modelling and molecular dynamics simulations: comparative studies of human aquaporin-1.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1866351

25 September 2018

The tobacco aquaporin NtAQP1 is a membrane CO2 pore with physiological functions.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1866351

25 September 2018

Functional selectivity for glycerol of the nodulin 26 subfamily of plant membrane intrinsic proteins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1866351

25 September 2018

PHAT: a transmembrane-specific substitution matrix. Predicted hydrophobic and transmembrane

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1866351

25 September 2018

Statistical analysis of amino acid patterns in transmembrane helices: the GxxxG motif occurs frequently and in association with beta-branched residues at neighboring positions.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1866351

25 September 2018

Plant aquaporins: multifunctional water and solute channels with expanding roles

1 reference

https://pubmed.ncbi.nlm.nih.gov/17445256

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Aquaporins: Phylogeny, Structure, and Physiology of Water Channels

1 reference

https://pubmed.ncbi.nlm.nih.gov/17445256

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Structural clues in the sequences of the aquaporins

1 reference

https://pubmed.ncbi.nlm.nih.gov/17445256

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identification of 33 rice aquaporin genes and analysis of their expression and function

1 reference

https://pubmed.ncbi.nlm.nih.gov/17445256

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1186/1472-6807-7-27

1 reference

Europe PubMed Central

10 August 2017

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0 references

1 reference

Europe PubMed Central

10 August 2017

1 reference

Europe PubMed Central

10 August 2017

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