(Q35796830)

English

Characterization of genome-wide enhancer-promoter interactions reveals co-expression of interacting genes and modes of higher order chromatin organization

scientific article published on 24 January 2012

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scholarly article

1 reference

Europe PubMed Central

10 August 2017

Characterization of genome-wide enhancer-promoter interactions reveals co-expression of interacting genes and modes of higher order chromatin organization (English)

1 reference

Europe PubMed Central

10 August 2017

author name string

Iouri Chepelev

1

1 reference

Europe PubMed Central

10 August 2017

Gang Wei

2

1 reference

Europe PubMed Central

10 August 2017

Dara Wangsa

3

1 reference

Europe PubMed Central

10 August 2017

Qingsong Tang

4

1 reference

Europe PubMed Central

10 August 2017

Keji Zhao

5

1 reference

Europe PubMed Central

10 August 2017

publication date

24 January 2012

1 reference

Europe PubMed Central

10 August 2017

1 reference

Europe PubMed Central

10 August 2017

22

1 reference

Europe PubMed Central

10 August 2017

3

1 reference

Europe PubMed Central

10 August 2017

490-503

1 reference

Europe PubMed Central

10 August 2017

describes a project that uses

1 reference

Europe PubMed Central

9 June 2022

https://europepmc.org/search?query=(METHODS:'Cytoscape')

based on heuristic

inferred from PubMed Central ID database lookup

https://scigraph.springernature.com/pub.10.1038/cr.2012.15

0 references

H3K4 tri-methylation provides an epigenetic signature of active enhancers

1 reference

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A role for cohesin in T-cell-receptor rearrangement and thymocyte differentiation

1 reference

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CTCF-mediated functional chromatin interactome in pluripotent cells

1 reference

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Mapping and analysis of chromatin state dynamics in nine human cell types

1 reference

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A unique chromatin signature uncovers early developmental enhancers in humans

1 reference

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Histone H3K27ac separates active from poised enhancers and predicts developmental state

1 reference

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Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities

1 reference

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Nucleosome dynamics define transcriptional enhancers

1 reference

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Preferential associations between co-regulated genes reveal a transcriptional interactome in erythroid cells

1 reference

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An oestrogen-receptor-α-bound human chromatin interactome

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CCCTC-binding factor and the transcription factor T-bet orchestrate T helper 1 cell-specific structure and function at the interferon-gamma locus

1 reference

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Comprehensive mapping of long-range interactions reveals folding principles of the human genome

1 reference

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1 reference

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1 reference

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Histone modifications at human enhancers reflect global cell-type-specific gene expression

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3292289

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Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3292289

11 July 2018

ChIP-seq accurately predicts tissue-specific activity of enhancers

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3292289

11 July 2018

Genome-wide analysis of transcription factor binding sites based on ChIP-Seq data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3292289

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Global analysis of the insulator binding protein CTCF in chromatin barrier regions reveals demarcation of active and repressive domains

1 reference

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Model-based analysis of ChIP-Seq (MACS)

1 reference

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A global view of gene activity and alternative splicing by deep sequencing of the human transcriptome

1 reference

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Combinatorial patterns of histone acetylations and methylations in the human genome

1 reference

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11 July 2018

Gene regulation in the third dimension

1 reference

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Allele-specific nuclear positioning of the monoallelically expressed astrocyte marker GFAP

1 reference

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High-resolution mapping and characterization of open chromatin across the genome

1 reference

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Cohesins functionally associate with CTCF on mammalian chromosome arms

1 reference

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Cohesin mediates transcriptional insulation by CCCTC-binding factor

1 reference

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Gene regulation through nuclear organization.

1 reference

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Analysis of the vertebrate insulator protein CTCF-binding sites in the human genome

1 reference

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Beyond the sequence: cellular organization of genome function

1 reference

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1 reference

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The locus control region is required for association of the murine beta-globin locus with engaged transcription factories during erythroid maturation

1 reference

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Interchromosomal associations between alternatively expressed loci

1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1038/CR.2012.15

1 reference

Europe PubMed Central

10 August 2017

1 reference

Europe PubMed Central

10 August 2017

1 reference

Europe PubMed Central

10 August 2017

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