(Q35804220)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26459856%20AND%20SRC:MED&resulttype=core&format=json

26 February 2020

title

Jitterbug: somatic and germline transposon insertion detection at single-nucleotide resolution (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26459856%20AND%20SRC:MED&resulttype=core&format=json

26 February 2020

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26459856%20AND%20SRC:MED&resulttype=core&format=json

26 February 2020

Josep M. Casacuberta

series ordinal

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26459856%20AND%20SRC:MED&resulttype=core&format=json

26 February 2020

Stephan Ossowski

series ordinal

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26459856%20AND%20SRC:MED&resulttype=core&format=json

26 February 2020

author name string

Elizabeth Hénaff

series ordinal

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26459856%20AND%20SRC:MED&resulttype=core&format=json

26 February 2020

language of work or name

English

0 references

publication date

12 October 2015

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26459856%20AND%20SRC:MED&resulttype=core&format=json

26 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26459856%20AND%20SRC:MED&resulttype=core&format=json

26 February 2020

volume

16

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26459856%20AND%20SRC:MED&resulttype=core&format=json

26 February 2020

page(s)

768

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26459856%20AND%20SRC:MED&resulttype=core&format=json

Creative Commons Attribution 4.0 International

26 February 2020

copyright license

start time

12 October 2015

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

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1 reference

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Somatic retrotransposition in human cancer revealed by whole-genome and exome sequencing

27 July 2018

1 reference

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TEMP: a computational method for analyzing transposable element polymorphism in populations

27 July 2018

1 reference

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A bountiful harvest: genomic insights into crop domestication phenotypes

27 July 2018

1 reference

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Transposon variants and their effects on gene expression in Arabidopsis

27 July 2018

1 reference

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How important are transposons for plant evolution?

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4603299

RetroSeq: transposable element discovery from next-generation sequencing data

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4603299

LINE-1 retrotransposition in the nervous system

27 July 2018

1 reference

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Transposable elements: an abundant and natural source of regulatory sequences for host genes.

27 July 2018

1 reference

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A mostly traditional approach improves alignment of bisulfite-converted DNA.

27 July 2018

1 reference

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A comprehensive map of mobile element insertion polymorphisms in humans

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4603299

Reference-guided assembly of four diverse Arabidopsis thaliana genomes

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4603299

Genome structural variation discovery and genotyping

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4603299

Transpositional landscape of the rice genome revealed by paired-end mapping of high-throughput re-sequencing data.

27 July 2018

1 reference

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Alu repeat discovery and characterization within human genomes

27 July 2018

1 reference

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Next-generation VariationHunter: combinatorial algorithms for transposon insertion discovery

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4603299

Fast and accurate long-read alignment with Burrows-Wheeler transform

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4603299

Molecular domestication of transposable elements: from detrimental parasites to useful host genes.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4603299

Sequencing of natural strains of Arabidopsis thaliana with short reads

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4603299

Alu elements and hominid phylogenetics

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4603299

Analysis of the genome sequence of the flowering plant Arabidopsis thaliana

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4603299

Extensive amplification of the E2F transcription factor binding sites by transposons during evolution of Brassica species

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4603299

Increased l1 retrotransposition in the neuronal genome in schizophrenia

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4603299

Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4603299

Endogenous retrotransposition activates oncogenic pathways in hepatocellular carcinoma

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4603299

Loss-of-function of a ubiquitin-related modifier promotes the mobilization of the active MITE mPing

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4603299

Fast isogenic mapping-by-sequencing of ethyl methanesulfonate-induced mutant bulks.

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4603299

Landscape of somatic retrotransposition in human cancers

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4603299

Transposable elements have rewired the core regulatory network of human embryonic stem cells

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4603299

BEDTools: a flexible suite of utilities for comparing genomic features

25 September 2018

1 reference

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Transposon-induced gene activation as a mechanism generating cluster shape somatic variation in grapevine.

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4603299

Genome-wide analysis of transposon insertion polymorphisms reveals intraspecific variation in cultivated rice.

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4603299

Harbinger transposons and an ancient HARBI1 gene derived from a transposase

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4603299

Mobile elements: drivers of genome evolution

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4603299

BLAT—The BLAST-Like Alignment Tool

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4603299

Retrotransposon-induced mutations in grape skin color

25 September 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/26459856

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/S12864-015-1975-5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26459856%20AND%20SRC:MED&resulttype=core&format=json

26 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26459856%20AND%20SRC:MED&resulttype=core&format=json

26 February 2020

PubMed publication ID

26459856

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26459856%20AND%20SRC:MED&resulttype=core&format=json