(Q35818943)

10 August 2017

Automatic Prediction of Protein 3D Structures by Probabilistic Multi-template Homology Modeling (English)

1 reference

protein structure prediction

10 August 2017

probabilistic modeling

0 references

0 references

1 reference

2

1 reference

10 August 2017

Armin Meier

1

1 reference

10 August 2017

23 October 2015

1 reference

PLOS Computational Biology

10 August 2017

1 reference

10 August 2017

11

1 reference

10 August 2017

e1004343

1 reference

10 August 2017

10

1 reference

Creative Commons Attribution 4.0 International

10 August 2017

start time

23 October 2015

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

describes a project that uses

Bayes' theorem

1 reference

18 June 2022

https://europepmc.org/article/PMC/4619893

based on heuristic

inferred from PubMed Central ID database lookup

cites work

Assessment of template-based protein structure predictions in CASP10

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4619893

CASP10 results compared to those of previous CASP experiments

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4619893

A comparative assessment and analysis of 20 representative sequence alignment methods for protein structure prediction.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4619893

Putting the pieces together: integrative modeling platform software for structure determination of macromolecular assemblies

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4619893

HHblits: lightning-fast iterative protein sequence searching by HMM-HMM alignment

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4619893

Assessment of template based protein structure predictions in CASP9.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4619893

CASP9 assessment of free modeling target predictions

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4619893

RaptorX: exploiting structure information for protein alignment by statistical inference

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4619893

Protein sequence comparison and fold recognition: progress and good-practice benchmarking

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4619893

MULTICOM: a multi-level combination approach to protein structure prediction and its assessments in CASP8

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4619893

Fast and accurate automatic structure prediction with HHpred.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4619893

Using multiple templates to improve quality of homology models in automated homology modeling.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4619893

A multi-template combination algorithm for protein comparative modeling.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4619893

I-TASSER server for protein 3D structure prediction

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4619893

Assessment of CASP7 predictions in the high accuracy template-based modeling category

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4619893

Comparative protein structure modeling by combining multiple templates and optimizing sequence-to-structure alignments.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4619893

Fold recognition by predicted alignment accuracy.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4619893

TM-align: a protein structure alignment algorithm based on the TM-score

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4619893

All are not equal: a benchmark of different homology modeling programs

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4619893

SPICKER: a clustering approach to identify near-native protein folds

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4619893

SWISS-MODEL: An automated protein homology-modeling server

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4619893

Modeling of loops in protein structures

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4619893

Comparative protein modelling by satisfaction of spatial restraints

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4619893

Weights for data related by a tree

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4619893

Accurate modeling of protein conformation by automatic segment matching

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4619893

An evaluation of automated homology modelling methods at low target template sequence similarity.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4619893

Using multiple structure alignments, fast model building, and energetic analysis in fold recognition and homology modeling

24 September 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/26496371

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

All-atom chain-building by optimizing MODELLER energy function using conformational space annealing

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/26496371

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1371/JOURNAL.PCBI.1004343

1 reference

10 August 2017

journals/ploscb/MeierS15

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

10 August 2017

1 reference

PMCID

4619893