(Q35829053)

10 August 2017

Exposing the core promoter is sufficient to activate transcription and alter coactivator requirement at RNR3. (English)

1 reference

10 August 2017

Hesheng Zhang

1

1 reference

10 August 2017

Joseph C Reese

series ordinal

2

1 reference

10 August 2017

language of work or name

English

0 references

publication date

14 May 2007

1 reference

Proceedings of the National Academy of Sciences of the United States of America

10 August 2017

1 reference

10 August 2017

104

1 reference

10 August 2017

21

1 reference

10 August 2017

8833-8838

1 reference

A genomic code for nucleosome positioning

10 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1885588

The FACT complex travels with elongating RNA polymerase II and is important for the fidelity of transcriptional initiation in vivo

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1885588

Transcription elongation factors repress transcription initiation from cryptic sites.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1885588

Localized recruitment of a chromatin-remodeling activity by an activator in vivo drives transcriptional elongation

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1885588

Bromodomains mediate an acetyl-histone encoded antisilencing function at heterochromatin boundaries

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1885588

Different sensitivities of bromodomain factors 1 and 2 to histone H4 acetylation

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1885588

SWI/SNF-dependent chromatin remodeling of RNR3 requires TAF(II)s and the general transcription machinery

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1885588

SWI/SNF-dependent long-range remodeling of yeast HIS3 chromatin

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1885588

Yeast spt6-140 mutation, affecting chromatin and transcription, preferentially increases recombination in which Rad51p-mediated strand exchange is dispensable

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1885588

Derepression of DNA damage-regulated genes requires yeast TAF(II)s

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1885588

The Swi/Snf family nucleosome-remodeling complexes and transcriptional control

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1885588

Promoter targeting and chromatin remodeling by the SWI/SNF complex

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1885588

TBP-associated factors (TAFIIs): multiple, selective transcriptional mediators in common complexes

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1885588

Chromosomal landscape of nucleosome-dependent gene expression and silencing in yeast.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1885588

Functional analysis of a homopolymeric (dA-dT) element that provides nucleosomal access to yeast and mammalian transcription factors

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1885588

The DNA replication and damage checkpoint pathways induce transcription by inhibition of the Crt1 repressor

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1885588

Structure, dynamics, and function of chromatin in vitro

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1885588

TAFs mediate transcriptional activation and promoter selectivity

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1885588

Repression domain of the yeast global repressor Tup1 interacts directly with histones H3 and H4.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1885588

Nucleosome reconstitution on plasmid-inserted poly(dA) . poly(dT)

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1885588

Nucleosome loss activates yeast downstream promoters in vivo

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1885588

Histones are first hyperacetylated and then lose contact with the activated PHO5 promoter.

27 July 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0701666104

Nucleosomes unfold completely at a transcriptionally active promoter.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0701666104

Evidence for nucleosome depletion at active regulatory regions genome-wide

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0701666104

Genome-scale identification of nucleosome positions in S. cerevisiae

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0701666104

Transcriptional activators are dispensable for transcription in the absence of Spt6-mediated chromatin reassembly of promoter regions

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0701666104

Ssn6-Tup1 regulates RNR3 by positioning nucleosomes and affecting the chromatin structure at the upstream repression sequence.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0701666104

Molecular genetic analysis of the yeast repressor Rfx1/Crt1 reveals a novel two-step regulatory mechanism

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0701666104

Precise nucleosome positioning and the TATA box dictate requirements for the histone H4 tail and the bromodomain factor Bdf1.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0701666104

Redundant mechanisms are used by Ssn6-Tup1 in repressing chromosomal gene transcription in Saccharomyces cerevisiae

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0701666104

Ssn6-Tup1 requires the ISW2 complex to position nucleosomes in Saccharomyces cerevisiae

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0701666104

Promoter targeting of chromatin-modifying complexes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0701666104

Transcription activation in cells lacking TAFIIS.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0701666104

Effect of sequence-directed nucleosome disruption on cell-type-specific repression by alpha2/Mcm1 in the yeast genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0701666104

Destabilization of nucleosomes by an unusual DNA conformation adopted by poly(dA) small middle dotpoly(dT) tracts in vivo

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0701666104

A Snf2 family ATPase complex required for recruitment of the histone H2A variant Htz1.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0701666104

Acetylation of H2AZ Lys 14 is associated with genome-wide gene activity in yeast

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0701666104

Modifying gene expression programs by altering core promoter chromatin architecture.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0701666104

Functional analysis of TFIID components using conditional mutants.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0701666104

Isolation of yeast nuclei and micrococcal nuclease mapping of nucleosome positioning.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1885588

Poly(dA:dT), a ubiquitous promoter element that stimulates transcription via its intrinsic DNA structure.

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1885588

Telomere looping permits gene activation by a downstream UAS in yeast

24 September 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0701666104

Mapping chromatin structure in yeast

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17502614

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Intrinsic histone-DNA interactions and low nucleosome density are important for preferential accessibility of promoter regions in yeast

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17502614

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Nucleosome positions predicted through comparative genomics

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17502614

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1073/PNAS.0701666104

1 reference

10 August 2017

0 references

1 reference

10 August 2017

PubMed publication ID

17502614

1 reference