(Q35874599)

English

Searching for and predicting the activity of sites for DNA binding proteins: compilation and analysis of the binding sites for Escherichia coli integration host factor (IHF)

scientific article published in September 1990

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scholarly article

1 reference

Europe PubMed Central

PMC publication ID

10 August 2017

Searching for and predicting the activity of sites for DNA binding proteins: compilation and analysis of the binding sites for Escherichia coli integration host factor (IHF) (English)

1 reference

Europe PubMed Central

PMC publication ID

10 August 2017

Escherichia coli

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author name string

J A Goodrich

1

1 reference

Europe PubMed Central

PMC publication ID

10 August 2017

M L Schwartz

2

1 reference

Europe PubMed Central

PMC publication ID

10 August 2017

W R McClure

3

1 reference

Europe PubMed Central

PMC publication ID

10 August 2017

language of work or name

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publication date

1 September 1990

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Europe PubMed Central

PMC publication ID

10 August 2017

Nucleic Acids Research

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Europe PubMed Central

PMC publication ID

10 August 2017

18

1 reference

Europe PubMed Central

PMC publication ID

10 August 2017

17

1 reference

Europe PubMed Central

PMC publication ID

10 August 2017

4993-5000

1 reference

Europe PubMed Central

PMC publication ID

10 August 2017

The pitch of chromatin DNA is reflected in its nucleotide sequence

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=332103

11 July 2018

Primary structure of the essential replicon of the plasmid pSC101.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=332103

11 July 2018

Primary structure of the himA gene of Escherichia coli: homology with DNA-binding protein HU and association with the phenylalanyl-tRNA synthetase operon

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=332103

11 July 2018

Escherichia colipromoter sequences predictin vitroRNA polymerase selectivity

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=332103

11 July 2018

Compilation and analysis ofEscherichia colipromoter DNA sequences

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=332103

11 July 2018

DNA sequence adjacent to flagellar genes and evolution of flagellar-phase variation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=332103

11 July 2018

Nucleotide sequence and genome organisation of filamentous bacteriophages fl and fd.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=332103

11 July 2018

The lambda phage att site: functional limits and interaction with Int protein

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=332103

11 July 2018

An accessory role for Escherichia coli integration host factor: characterization of a lambda mutant dependent upon integration host factor for DNA packaging

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=332103

11 July 2018

E. coli integration host factor binds to specific sites in DNA

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=332103

11 July 2018

Partition of unit-copy miniplasmids to daughter cells. III. The DNA sequence and functional organization of the P1 partition region

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=332103

11 July 2018

oriT sequence of the antibiotic resistance plasmid R100.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=332103

11 July 2018

The complete nucleotide sequence of the ilvGMEDA operon of Escherichia coli K-12.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=332103

11 July 2018

Information content of binding sites on nucleotide sequences

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=332103

11 July 2018

Integration host factor and conjugative transfer of the antibiotic resistance plasmid R100.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=332103

11 July 2018

Integration host factor (IHF) represses a Chlamydomonas chloroplast promoter in E. coli

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=332103

11 July 2018

Attachment site of the genetic element e14

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=332103

11 July 2018

Mapping and regulation of the pifC promoter of the F plasmid

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=332103

11 July 2018

Integration host factor interacts with the DNA replication enhancer of filamentous phage f1

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=332103

11 July 2018

Selection of DNA binding sites by regulatory proteins. II. The binding specificity of cyclic AMP receptor protein to recognition sites

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=332103

11 July 2018

DNA sequence at the end of IS1 required for transposition.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=332103

11 July 2018

Sequence of the Escherichia coli pheST operon and identification of the himA gene

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=332103

11 July 2018

Essential interaction between lambdoid phage 21 terminase and the Escherichia coli integrative host factor.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=332103

11 July 2018

The phi 80 and P22 attachment sites. Primary structure and interaction with Escherichia coli integration host factor

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=332103

11 July 2018

Empirical estimation of protein-induced DNA bending angles: applications to lambda site-specific recombination complexes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=332103

11 July 2018

Integration host factor: a protein for all reasons.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=332103

11 July 2018

The integration host factor of Escherichia coli binds to multiple sites at plasmid R6K gamma origin and is essential for replication

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=332103

11 July 2018

The interaction of Escherichia coli integration host factor with the cohesive end sites of phages lambda and 21.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=332103

11 July 2018

Role of Escherichia coli IHF protein in lambda site-specific recombination. A mutational analysis of binding sites.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=332103

11 July 2018

Mutations in an integration host factor-binding site: effect on lambda site-specific recombination and regulatory implications

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=332103

11 July 2018

Analysis of the occurrence of promoter-sites in DNA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=332103

11 July 2018

Identifying protein-binding sites from unaligned DNA fragments

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=332103

11 July 2018

Integration host factor is required for the DNA inversion that controls phase variation in Escherichia coli

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=332103

11 July 2018

Fimbrial phase variation in Escherichia coli: dependence on integration host factor and homologies with other site-specific recombinases

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=332103

11 July 2018

Altered osmoregulation of ompF in integration host factor mutants of Escherichia coli

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=332103

11 July 2018

Gamma delta transposase and integration host factor bind cooperatively at both ends of gamma delta.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=332103

11 July 2018

Participation of Escherichia coli integration host factor in the P1 plasmid partition system

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=332103

11 July 2018

Binding of integration host factor (IHF) to the ilvGp1 promoter of the ilvGMEDA operon of Escherichia coli K12

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=332103

11 July 2018

Bending of the bacteriophage lambda attachment site by Escherichia coli integration host factor

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=332103

11 July 2018

Escherichia coli integration host factor bends the DNA at the ends of IS1 and in an insertion hotspot with multiple IHF binding sites

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=332103

11 July 2018

Escherichia coli integration host factor binds specifically to the ends of the insertion sequence IS1 and to its major insertion hot-spot in pBR322.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=332103

11 July 2018

Artificial nucleosome positioning sequences

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=332103

11 July 2018

Physical and biological consequences of interactions between integration host factor (IHF) and coliphage lambda late p'R promoter and its mutants

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=332103

11 July 2018

Mutational analysis of IS10's outside end.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=332103

11 July 2018

Repression of the lambda pcin promoter by integrative host factor

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=332103

11 July 2018

Phasing of protein-induced DNA bends in a recombination complex.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=332103

11 July 2018

Repression of transcription from the b2-att region of coliphage lambda by integration host factor

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=332103

11 July 2018

The interaction of E. coli integration host factor and lambda cos DNA: multiple complex formation and protein-induced bending

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=332103

11 July 2018

Nucleotide sequence analysis of the chloramphenicol resistance transposon Tn9

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=332103

11 July 2018

Nucleotide sequence of the region of an origin of replication of the antibiotic resistance plasmid R6K

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=332103

11 July 2018

Viral integration and excision: structure of the lambda att sites

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=332103

11 July 2018

Nucleotide sequence of an insertion element, IS1

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=332103

11 July 2018

Three promoters near the termini of IS10: pIN, pOUT, and pIII.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=332103

24 September 2018

In vitro insertional mutagenesis with a selectable DNA fragment

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=332103

24 September 2018

Flexibility of native DNA from the sedimentation behavior as a function of molecular weight and temperature

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=332103

24 September 2018

The integration host factor of Escherichia coli binds to bent DNA at the origin of replication of the plasmid pSC101.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=332103

24 September 2018

Primary structure of the hip gene of Escherichia coli and of its product, the beta subunit of integration host factor

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=332103

24 September 2018

The interaction of E. coli IHF protein with its specific binding sites

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=332103

24 September 2018

Functional replacement of a protein-induced bend in a DNA recombination site

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=332103

24 September 2018

Dual level control of the Escherichia coli pheST-himA operon expression. tRNA(Phe)-dependent attenuation and transcriptional operator-repressor control by himA and the SOS network

1 reference

https://pubmed.ncbi.nlm.nih.gov/2205834

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Supercoiling and integration host factor change the DNA conformation and alter the flow of convergent transcription in phage Mu

1 reference

https://pubmed.ncbi.nlm.nih.gov/2205834

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Alterations in the p'R promoter of coliphage lambda modify both its activity and interaction with the integration host factor (IHF)

1 reference

https://pubmed.ncbi.nlm.nih.gov/2205834

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Positive and negative regulation of the Mu operator by Mu repressor and Escherichia coli integration host factor

1 reference

https://pubmed.ncbi.nlm.nih.gov/2205834

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1093/NAR/18.17.4993

1 reference

Europe PubMed Central

PMC publication ID

10 August 2017

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

10 August 2017

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

10 August 2017

ResearchGate publication ID

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