(Q35894036)

11 August 2017

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title

Combining genome-wide and targeted gene expression profiling in drug discovery: microarrays and real-time PCR. (English)

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11 August 2017

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Daniel A Brazeau

1

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11 August 2017

1 October 2004

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11 August 2017

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11 August 2017

9

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11 August 2017

19

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11 August 2017

838-845

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Quantitative monitoring of gene expression patterns with a complementary DNA microarray

11 August 2017

1 reference

https://api.crossref.org/works/10.1016%2FS1359-6446%2804%2903231-3

7 January 2021

Expression monitoring by hybridization to high-density oligonucleotide arrays

1 reference

https://api.crossref.org/works/10.1016%2FS1359-6446%2804%2903231-3

7 January 2021

Exploring the new world of the genome with DNA microarrays

1 reference

https://api.crossref.org/works/10.1016%2FS1359-6446%2804%2903231-3

7 January 2021

Normalization of array hybridization experiments in differential gene expression analysis

1 reference

https://api.crossref.org/works/10.1016%2FS1359-6446%2804%2903231-3

7 January 2021

Issues in cDNA microarray analysis: quality filtering, channel normalization, models of variations and assessment of gene effects

1 reference

https://api.crossref.org/works/10.1016%2FS1359-6446%2804%2903231-3

7 January 2021

A comparison of normalization methods for high density oligonucleotide array data based on variance and bias

1 reference

https://api.crossref.org/works/10.1016%2FS1359-6446%2804%2903231-3

7 January 2021

New normalization methods for cDNA microarray data

1 reference

https://api.crossref.org/works/10.1016%2FS1359-6446%2804%2903231-3

7 January 2021

Normalization for cDNA microarray data: a robust composite method addressing single and multiple slide systematic variation

1 reference

https://api.crossref.org/works/10.1016%2FS1359-6446%2804%2903231-3

7 January 2021

Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes

1 reference

https://api.crossref.org/works/10.1016%2FS1359-6446%2804%2903231-3

7 January 2021

Analysis of variance for gene expression microarray data

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https://api.crossref.org/works/10.1016%2FS1359-6446%2804%2903231-3

7 January 2021

Gene expression data analysis

1 reference

https://api.crossref.org/works/10.1016%2FS1359-6446%2804%2903231-3

7 January 2021

Gene expression profile analysis by DNA microarrays: promise and pitfalls

1 reference

https://api.crossref.org/works/10.1016%2FS1359-6446%2804%2903231-3

7 January 2021

Importance of replication in microarray gene expression studies: statistical methods and evidence from repetitive cDNA hybridizations

1 reference

https://api.crossref.org/works/10.1016%2FS1359-6446%2804%2903231-3

7 January 2021

Computational analysis of microarray data

1 reference

https://api.crossref.org/works/10.1016%2FS1359-6446%2804%2903231-3

7 January 2021

Statistical design and the analysis of gene expression microarray data

1 reference

https://api.crossref.org/works/10.1016%2FS1359-6446%2804%2903231-3

7 January 2021

Interpretation, design, and analysis of gene array expression experiments

1 reference

https://api.crossref.org/works/10.1016%2FS1359-6446%2804%2903231-3

7 January 2021

Cluster analysis and display of genome-wide expression patterns

1 reference

https://api.crossref.org/works/10.1016%2FS1359-6446%2804%2903231-3

7 January 2021

Systematic determination of genetic network architecture

1 reference

https://api.crossref.org/works/10.1016%2FS1359-6446%2804%2903231-3

7 January 2021

Analysis of gene expression data using self-organizing maps

1 reference

https://api.crossref.org/works/10.1016%2FS1359-6446%2804%2903231-3

7 January 2021

Analyzing array data using supervised methods.

1 reference

https://api.crossref.org/works/10.1016%2FS1359-6446%2804%2903231-3

7 January 2021

Statistical tests for differential expression in cDNA microarray experiments

1 reference

https://api.crossref.org/works/10.1016%2FS1359-6446%2804%2903231-3

7 January 2021

Nonparametric methods for identifying differentially expressed genes in microarray data

1 reference

https://api.crossref.org/works/10.1016%2FS1359-6446%2804%2903231-3

7 January 2021

Empirical bayes methods and false discovery rates for microarrays

1 reference

https://api.crossref.org/works/10.1016%2FS1359-6446%2804%2903231-3

7 January 2021

On the use of permutation in and the performance of a class of nonparametric methods to detect differential gene expression.

1 reference

https://api.crossref.org/works/10.1016%2FS1359-6446%2804%2903231-3

7 January 2021

Statistical methods for ranking differentially expressed genes

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https://api.crossref.org/works/10.1016%2FS1359-6446%2804%2903231-3

7 January 2021

Modified nonparametric approaches to detecting differentially expressed genes in replicated microarray experiments

1 reference

https://api.crossref.org/works/10.1016%2FS1359-6446%2804%2903231-3

7 January 2021

Significance and statistical errors in the analysis of DNA microarray data

1 reference

https://api.crossref.org/works/10.1016%2FS1359-6446%2804%2903231-3

7 January 2021

A comparison of parametric versus permutation methods with applications to general and temporal microarray gene expression data

1 reference

https://api.crossref.org/works/10.1016%2FS1359-6446%2804%2903231-3

7 January 2021

Confidence Limits on Phylogenies: an Approach using the Bootstrap

1 reference

https://api.crossref.org/works/10.1016%2FS1359-6446%2804%2903231-3

7 January 2021

A direct approach to false discovery rates

1 reference

https://api.crossref.org/works/10.1016%2FS1359-6446%2804%2903231-3

7 January 2021

Statistical significance for genomewide studies

1 reference

https://api.crossref.org/works/10.1016%2FS1359-6446%2804%2903231-3

7 January 2021

Identifying differentially expressed genes using false discovery rate controlling procedures

1 reference

https://api.crossref.org/works/10.1016%2FS1359-6446%2804%2903231-3

7 January 2021

cDNA microarray analysis of vascular gene expression after nitric oxide donor infusions in rats: implications for nitrate tolerance mechanisms

1 reference

https://api.crossref.org/works/10.1016%2FS1359-6446%2804%2903231-3

7 January 2021

Inhalant nitrite exposure alters mouse hepatic angiogenic gene expression

1 reference

https://api.crossref.org/works/10.1016%2FS1359-6446%2804%2903231-3

7 January 2021

Significance analysis of microarrays applied to the ionizing radiation response

1 reference

https://api.crossref.org/works/10.1016%2FS1359-6446%2804%2903231-3

7 January 2021

A comparative review of statistical methods for discovering differentially expressed genes in replicated microarray experiments

1 reference

https://api.crossref.org/works/10.1016%2FS1359-6446%2804%2903231-3

7 January 2021

A mixture model approach to detecting differentially expressed genes with microarray data

1 reference

https://api.crossref.org/works/10.1016%2FS1359-6446%2804%2903231-3

7 January 2021

Quantitative assessment of DNA microarrays--comparison with Northern blot analyses

1 reference

https://api.crossref.org/works/10.1016%2FS1359-6446%2804%2903231-3

7 January 2021

Accuracy and calibration of commercial oligonucleotide and custom cDNA microarrays

1 reference

https://api.crossref.org/works/10.1016%2FS1359-6446%2804%2903231-3

7 January 2021

Discordant protein and mRNA expression in lung adenocarcinomas

1 reference

https://api.crossref.org/works/10.1016%2FS1359-6446%2804%2903231-3

7 January 2021

Correlation between protein and mRNA abundance in yeast

1 reference

https://api.crossref.org/works/10.1016%2FS1359-6446%2804%2903231-3

7 January 2021

Differential gene expression patterns revealed by oligonucleotide versus long cDNA arrays

1 reference

https://api.crossref.org/works/10.1016%2FS1359-6446%2804%2903231-3

7 January 2021

Microarray results: how accurate are they?

1 reference

https://api.crossref.org/works/10.1016%2FS1359-6446%2804%2903231-3

7 January 2021

Analysis of matched mRNA measurements from two different microarray technologies

1 reference

https://api.crossref.org/works/10.1016%2FS1359-6446%2804%2903231-3

7 January 2021

Evaluation of gene expression measurements from commercial microarray platforms

1 reference

https://api.crossref.org/works/10.1016%2FS1359-6446%2804%2903231-3

7 January 2021

Improved quantitative real-time RT-PCR for expression profiling of individual cells

1 reference

https://api.crossref.org/works/10.1016%2FS1359-6446%2804%2903231-3

7 January 2021

Technical aspects of quantitative competitive PCR.

1 reference

https://api.crossref.org/works/10.1016%2FS1359-6446%2804%2903231-3

7 January 2021

Quantification of mRNA using real-time reverse transcription PCR (RT-PCR): trends and problems.

1 reference

https://api.crossref.org/works/10.1016%2FS1359-6446%2804%2903231-3

7 January 2021

Real time quantitative PCR

1 reference

https://api.crossref.org/works/10.1016%2FS1359-6446%2804%2903231-3

7 January 2021

DNA probes using fluorescence resonance energy transfer (FRET): designs and applications

1 reference

https://api.crossref.org/works/10.1016%2FS1359-6446%2804%2903231-3

7 January 2021

Quantitative reverse transcription-polymerase chain reaction (RT-PCR): a comparison of primer-dropping, competitive, and real-time RT-PCRs

1 reference

https://api.crossref.org/works/10.1016%2FS1359-6446%2804%2903231-3

7 January 2021

Sensitivity and accuracy of quantitative real-time polymerase chain reaction using SYBR green I depends on cDNA synthesis conditions

1 reference

https://api.crossref.org/works/10.1016%2FS1359-6446%2804%2903231-3

7 January 2021

Oligonucleotides with fluorescent dyes at opposite ends provide a quenched probe system useful for detecting PCR product and nucleic acid hybridization

1 reference

https://api.crossref.org/works/10.1016%2FS1359-6446%2804%2903231-3

7 January 2021

Detection of specific polymerase chain reaction product by utilizing the 5'----3' exonuclease activity of Thermus aquaticus DNA polymerase

1 reference

https://api.crossref.org/works/10.1016%2FS1359-6446%2804%2903231-3

7 January 2021

Thermodynamic basis of the enhanced specificity of structured DNA probes

1 reference

https://api.crossref.org/works/10.1016%2FS1359-6446%2804%2903231-3

7 January 2021

Molecular beacons: probes that fluoresce upon hybridization

1 reference

https://api.crossref.org/works/10.1016%2FS1359-6446%2804%2903231-3

7 January 2021

Multicolor molecular beacons for allele discrimination

1 reference

https://api.crossref.org/works/10.1016%2FS1359-6446%2804%2903231-3

7 January 2021

Detection of PCR products using self-probing amplicons and fluorescence

1 reference

https://api.crossref.org/works/10.1016%2FS1359-6446%2804%2903231-3

7 January 2021

Multiplex quantitative PCR using self-quenched primers labeled with a single fluorophore

1 reference

https://api.crossref.org/works/10.1016%2FS1359-6446%2804%2903231-3

7 January 2021

RTPrimerDB: the real-time PCR primer and probe database

1 reference

https://api.crossref.org/works/10.1016%2FS1359-6446%2804%2903231-3

7 January 2021

A PCR primer bank for quantitative gene expression analysis

1 reference

https://api.crossref.org/works/10.1016%2FS1359-6446%2804%2903231-3

7 January 2021

A reliability test of standard-based quantitative PCR: exogenous vs endogenous standards.

1 reference

https://api.crossref.org/works/10.1016%2FS1359-6446%2804%2903231-3

7 January 2021

A new mathematical model for relative quantification in real-time RT-PCR

1 reference

https://api.crossref.org/works/10.1016%2FS1359-6446%2804%2903231-3

7 January 2021

Relative expression software tool (REST©) for group-wise comparison and statistical analysis of relative expression results in real-time PCR

1 reference

https://api.crossref.org/works/10.1016%2FS1359-6446%2804%2903231-3

7 January 2021

Joint cytokine quantification in two rodent arthritis models: kinetics of expression, correlation of mRNA and protein levels and response to prednisolone treatment

1 reference

https://api.crossref.org/works/10.1016%2FS1359-6446%2804%2903231-3

7 January 2021

Glucocorticoid-induced increase in lymphocytic FKBP51 messenger ribonucleic acid expression: a potential marker for glucocorticoid sensitivity, potency, and bioavailability

1 reference

https://api.crossref.org/works/10.1016%2FS1359-6446%2804%2903231-3

7 January 2021

Alteration of pharmacokinetics of cyclophosphamide and suppression of the cytochrome p450 genes by ciprofloxacin.

1 reference

https://api.crossref.org/works/10.1016%2FS1359-6446%2804%2903231-3

7 January 2021

Expression, up-regulation, and transport activity of the multidrug-resistance protein Abcg2 at the mouse blood-brain barrier.

1 reference

https://api.crossref.org/works/10.1016%2FS1359-6446%2804%2903231-3

7 January 2021

Down-regulation of the organic cation transporter 1 of rat liver in obstructive cholestasis

1 reference

https://api.crossref.org/works/10.1016%2FS1359-6446%2804%2903231-3

7 January 2021

Expression of multidrug resistance proteins in rat and human chronic pancreatitis.

1 reference

https://api.crossref.org/works/10.1016%2FS1359-6446%2804%2903231-3

7 January 2021

Factors influencing the cellular accumulation of SN-38 and camptothecin

1 reference

https://api.crossref.org/works/10.1016%2FS1359-6446%2804%2903231-3

7 January 2021

The multidrug resistance-associated protein 3 (MRP3) is associated with a poor outcome in childhood ALL and may account for the worse prognosis in male patients and T-cell immunophenotype

1 reference

https://api.crossref.org/works/10.1016%2FS1359-6446%2804%2903231-3

7 January 2021

CYP2C44, a new murine CYP2C that metabolizes arachidonic acid to unique stereospecific products.

1 reference

https://api.crossref.org/works/10.1016%2FS1359-6446%2804%2903231-3

7 January 2021

The efficacy of the combination therapy of 5-fluorouracil, cisplatin and leucovorin for hepatocellular carcinoma and its predictable factors

1 reference

https://api.crossref.org/works/10.1016%2FS1359-6446%2804%2903231-3

7 January 2021

Influence of culture time on the expression of drug-metabolizing enzymes in primary human hepatocytes and hepatoma cell line HepG2

1 reference

https://api.crossref.org/works/10.1016%2FS1359-6446%2804%2903231-3

7 January 2021

Quantitative real-time reverse transcription-polymerase chain reaction analysis of drug metabolizing and cytoprotective genes in psoriasis and regulation by ultraviolet radiation.

1 reference

https://api.crossref.org/works/10.1016%2FS1359-6446%2804%2903231-3

7 January 2021

Detection of the four sequence variations of MDR1 gene using TaqMan® MGB probe based real-time PCR and haplotype analysis in healthy Japanese subjects

1 reference

https://api.crossref.org/works/10.1016%2FS1359-6446%2804%2903231-3

7 January 2021

Allele and genotype frequencies of CYP2B6 and CYP3A5 in the Japanese population

1 reference

https://api.crossref.org/works/10.1016%2FS1359-6446%2804%2903231-3

7 January 2021

10.1016/S1359-6446(04)03231-3

Identifiers

DOI

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11 August 2017

1 reference

PubMed ID

15381136