(Q35922518)

English

Interplay between minor and major groove-binding transcription factors Sox2 and Oct1 in translocation on DNA studied by paramagnetic and diamagnetic NMR.

scientific article published on 6 March 2012

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scholarly article

1 reference

Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22396547%20AND%20SRC:MED&resulttype=core&format=json

25 January 2020

Interplay between minor and major groove-binding transcription factors Sox2 and Oct1 in translocation on DNA studied by paramagnetic and diamagnetic NMR (English)

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22396547%20AND%20SRC:MED&resulttype=core&format=json

25 January 2020

G. Marius Clore

2

1 reference

Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22396547%20AND%20SRC:MED&resulttype=core&format=json

25 January 2020

author name string

Yuki Takayama

1

1 reference

Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22396547%20AND%20SRC:MED&resulttype=core&format=json

25 January 2020

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publication date

6 March 2012

1 reference

Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22396547%20AND%20SRC:MED&resulttype=core&format=json

25 January 2020

Journal of Biological Chemistry

1 reference

Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22396547%20AND%20SRC:MED&resulttype=core&format=json

25 January 2020

287

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22396547%20AND%20SRC:MED&resulttype=core&format=json

25 January 2020

18

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22396547%20AND%20SRC:MED&resulttype=core&format=json

25 January 2020

14349-14363

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22396547%20AND%20SRC:MED&resulttype=core&format=json

25 January 2020

NMR View: A computer program for the visualization and analysis of NMR data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3340251

2 October 2017

Exploring translocation of proteins on DNA by NMR

1 reference

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2 October 2017

Intra- and intermolecular translocation of the bi-domain transcription factor Oct1 characterized by liquid crystal and paramagnetic NMR.

1 reference

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1 reference

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Mechanistic details of a protein-protein association pathway revealed by paramagnetic relaxation enhancement titration measurements

1 reference

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2 October 2017

Nonspecifically bound proteins spin while diffusing along DNA.

1 reference

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Theory, practice, and applications of paramagnetic relaxation enhancement for the characterization of transient low-population states of biological macromolecules and their complexes.

1 reference

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2 October 2017

Global jumping and domain-specific intersegment transfer between DNA cognate sites of the multidomain transcription factor Oct-1.

1 reference

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1 reference

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1 reference

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Visualization of transient encounter complexes in protein-protein association.

1 reference

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NMR structural and kinetic characterization of a homeodomain diffusing and hopping on nonspecific DNA.

1 reference

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Detecting transient intermediates in macromolecular binding by paramagnetic NMR.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3340251

2 October 2017

Characterization of nonspecific protein-DNA interactions by 1H paramagnetic relaxation enhancement.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3340251

2 October 2017

How do site-specific DNA-binding proteins find their targets?

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3340251

2 October 2017

Ensemble approach for NMR structure refinement against (1)H paramagnetic relaxation enhancement data arising from a flexible paramagnetic group attached to a macromolecule

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3340251

2 October 2017

Molecular basis for synergistic transcriptional activation by Oct1 and Sox2 revealed from the solution structure of the 42-kDa Oct1.Sox2.Hoxb1-DNA ternary transcription factor complex

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3340251

2 October 2017

EDTA-derivatized deoxythymidine as a tool for rapid determination of protein binding polarity to DNA by intermolecular paramagnetic relaxation enhancement

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3340251

2 October 2017

The Xplor-NIH NMR molecular structure determination package

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3340251

2 October 2017

Structural basis for SRY-dependent 46-X,Y sex reversal: modulation of DNA bending by a naturally occurring point mutation

1 reference

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2 October 2017

The recruitment of SOX/OCT complexes and the differential activity of HOXA1 and HOXB1 modulate the Hoxb1 auto-regulatory enhancer function

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3340251

2 October 2017

Coevolution of HMG domains and homeodomains and the generation of transcriptional regulation by Sox/POU complexes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3340251

2 October 2017

POU domain factors in the neuroendocrine system: lessons from developmental biology provide insights into human disease

1 reference

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2 October 2017

Pairing SOX off: with partners in the regulation of embryonic development

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3340251

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NMRPipe: a multidimensional spectral processing system based on UNIX pipes

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2 October 2017

Crystal structure of the Oct-1 POU domain bound to an octamer site: DNA recognition with tethered DNA-binding modules

1 reference

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Diffusion-controlled macromolecular interactions

1 reference

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2 October 2017

The POU domain: a large conserved region in the mammalian pit-1, oct-1, oct-2, and Caenorhabditis elegans unc-86 gene products

2 references

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21 January 2018

The ubiquitous octamer-binding protein Oct-1 contains a POU domain with a homeo box subdomain

1 reference

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1 reference

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Fly-casting in protein-DNA binding: frustration between protein folding and electrostatics facilitates target recognition

1 reference

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21 January 2018

TROSY-based z-exchange spectroscopy: application to the determination of the activation energy for intermolecular protein translocation between specific sites on different DNA molecules

1 reference

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21 January 2018

Direct Observation of Enhanced Translocation of a Homeodomain between DNA Cognate Sites by NMR Exchange Spectroscopy

1 reference

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1 reference

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12 December 2020

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10.1074/JBC.M112.352864

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22396547%20AND%20SRC:MED&resulttype=core&format=json

25 January 2020

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22396547%20AND%20SRC:MED&resulttype=core&format=json

25 January 2020

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22396547%20AND%20SRC:MED&resulttype=core&format=json

25 January 2020

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