(Q35935216)

11 August 2017

Rpn1 provides adjacent receptor sites for substrate binding and deubiquitination by the proteasome (English)

1 reference

Proteasome regulatory particle base subunit RPN1 YHR027C

11 August 2017

1 reference

GOA release 2020-03-11

1 reference

GOA release 2020-03-11

author name string

Yuan Shi

1

1 reference

11 August 2017

Xiang Chen

2

1 reference

11 August 2017

Suzanne Elsasser

3

1 reference

11 August 2017

Bradley B Stocks

4

1 reference

11 August 2017

Geng Tian

5

1 reference

11 August 2017

Byung-Hoon Lee

6

1 reference

11 August 2017

Yanhong Shi

7

1 reference

11 August 2017

Naixia Zhang

8

1 reference

11 August 2017

Stefanie A H de Poot

9

1 reference

11 August 2017

Fabian Tuebing

10

1 reference

11 August 2017

Shuangwu Sun

11

1 reference

11 August 2017

Jacob Vannoy

12

1 reference

11 August 2017

Sergey G Tarasov

13

1 reference

11 August 2017

John R Engen

14

1 reference

11 August 2017

Daniel Finley

15

1 reference

11 August 2017

Kylie J Walters

16

1 reference

11 August 2017

language of work or name

English

0 references

publication date

1 February 2016

1 reference

11 August 2017

1 reference

11 August 2017

351

1 reference

11 August 2017

6275

1 reference

describes a project that uses

11 August 2017

ImageJ

1 reference

11 June 2022

https://www.ebi.ac.uk/europepmc/webservices/rest/PMC4980823/fullTextXML

inferred from PubMed Central ID database lookup

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Gates, Channels, and Switches: Elements of the Proteasome Machine

2 October 2017

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Ubp6 deubiquitinase controls conformational dynamics and substrate degradation of the 26S proteasome.

2 October 2017

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Structural characterization of the interaction of Ubp6 with the 26S proteasome

2 October 2017

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Analytical Aspects of Hydrogen Exchange Mass Spectrometry

2 October 2017

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Substrate degradation by the proteasome: a single-molecule kinetic analysis

2 October 2017

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Efficient and generalized processing of multidimensional NUS NMR data: the NESTA algorithm and comparison of regularization terms.

2 October 2017

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Deep classification of a large cryo-EM dataset defines the conformational landscape of the 26S proteasome

2 October 2017

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Reconstitution of the 26S proteasome reveals functional asymmetries in its AAA+ unfoldase

2 October 2017

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Using chemical shift perturbation to characterise ligand binding

2 October 2017

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Transfer of Ho endonuclease and Ufo1 to the proteasome by the UbL-UbA shuttle protein, Ddi1, analysed by complex formation in vitro

2 October 2017

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Protein hydrogen exchange: testing current models

2 October 2017

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2 October 2017

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Probing protein interactions with hydrogen/deuterium exchange and mass spectrometry-a review

2 October 2017

1 reference

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The structure of the 26S proteasome subunit Rpn2 reveals its PC repeat domain as a closed toroid of two concentric α-helical rings

2 October 2017

1 reference

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Binding of ubiquitin conjugates to proteasomes as visualized with native gels

2 October 2017

1 reference

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Rpn1 and Rpn2 coordinate ubiquitin processing factors at proteasome

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4980823

APC/C-mediated multiple monoubiquitylation provides an alternative degradation signal for cyclin B1

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4980823

Mutations in UBQLN2 cause dominant X-linked juvenile and adult-onset ALS and ALS/dementia

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4980823

Identification of a functional docking site in the Rpn1 LRR domain for the UBA-UBL domain protein Ddi1

2 October 2017

1 reference

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The utility of hydrogen/deuterium exchange mass spectrometry in biopharmaceutical comparability studies

2 October 2017

1 reference

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CPORT: a consensus interface predictor and its performance in prediction-driven docking with HADDOCK.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4980823

Hydrogen exchange mass spectrometry for studying protein structure and dynamics

2 October 2017

1 reference

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Enhancement of proteasome activity by a small-molecule inhibitor of USP14

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4980823

Structure of Proteasome Ubiquitin Receptor hRpn13 and Its Activation by the Scaffolding Protein hRpn2

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4980823

Multitasking with ubiquitin through multivalent interactions

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4980823

Structure of the S5a:K48-Linked Diubiquitin Complex and Its Interactions with Rpn13

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4980823

Extraproteasomal Rpn10 restricts access of the polyubiquitin-binding protein Dsk2 to proteasome.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4980823

High-speed and high-resolution UPLC separation at zero degrees Celsius

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4980823

Recognition dynamics up to microseconds revealed from an RDC-derived ubiquitin ensemble in solution

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4980823

Protein structure and dynamics studied by mass spectrometry: H/D exchange, hydroxyl radical labeling, and related approaches.

2 October 2017

1 reference

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Ubiquitin docking at the proteasome through a novel pleckstrin-homology domain interaction

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4980823

Proteasome subunit Rpn13 is a novel ubiquitin receptor

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4980823

Yeast UBL-UBA proteins have partially redundant functions in cell cycle control.

2 October 2017

1 reference

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Practical aspects of (1)H transverse paramagnetic relaxation enhancement measurements on macromolecules.

2 October 2017

1 reference

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Deubiquitinating enzyme Ubp6 functions noncatalytically to delay proteasomal degradation.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4980823

Identification and characterization of EX1 kinetics in H/D exchange mass spectrometry by peak width analysis

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4980823

Partial unfolding of diverse SH3 domains on a wide timescale

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4980823

Hydrogen exchange mass spectrometry for the analysis of protein dynamics

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4980823

Mapping protein energy landscapes with amide hydrogen exchange and mass spectrometry: I. A generalized model for a two-state protein and comparison with experiment.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4980823

Multiubiquitin chain receptors define a layer of substrate selectivity in the ubiquitin-proteasome system

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4980823

Rad23 and Rpn10 serve as alternative ubiquitin receptors for the proteasome

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4980823

Global analysis of protein expression in yeast

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4980823

HADDOCK: a protein-protein docking approach based on biochemical or biophysical information

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4980823

Multiple associated proteins regulate proteasome structure and function

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4980823

Proteasome subunit Rpn1 binds ubiquitin-like protein domains

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4980823

Budding yeast Dsk2p is a polyubiquitin-binding protein that can interact with the proteasome

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4980823

The 19S complex of the proteasome regulates nucleotide excision repair in yeast.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4980823

Utilization of site-directed spin labeling and high-resolution heteronuclear nuclear magnetic resonance for global fold determination of large proteins with limited nuclear overhauser effect data

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4980823

Three new dominant drug resistance cassettes for gene disruption in Saccharomyces cerevisiae

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4980823

Pleiotropic defects caused by loss of the proteasome-interacting factors Rad23 and Rpn10 of Saccharomyces cerevisiae.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4980823

Epitope tagging of yeast genes using a PCR-based strategy: more tags and improved practical routines

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4980823

Multiubiquitin chain binding and protein degradation are mediated by distinct domains within the 26 S proteasome subunit Mcb1.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4980823

The multiubiquitin-chain-binding protein Mcb1 is a component of the 26S proteasome in Saccharomyces cerevisiae and plays a nonessential, substrate-specific role in protein turnover.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4980823

A 26 S protease subunit that binds ubiquitin conjugates

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4980823

New heterologous modules for classical or PCR-based gene disruptions in Saccharomyces cerevisiae

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4980823

Meta-analysis of Ubiquilin1 gene polymorphism and Alzheimer's disease risk

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4980823

The DNA damage-inducible UbL-UbA protein Ddi1 participates in Mec1-mediated degradation of Ho endonuclease

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4980823

Dss1 is a 26S proteasome ubiquitin receptor

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4980823

Together, Rpn10 and Dsk2 can serve as a polyubiquitin chain-length sensor

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4980823

Ubiquitin chain synthesis

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4980823

An unstructured initiation site is required for efficient proteasome-mediated degradation

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4980823

Heterologous URA3MX cassettes for gene replacement in Saccharomyces cerevisiae.

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4980823

Quantitative analysis of in vitro ubiquitinated cyclin B1 reveals complex chain topology

24 September 2018

1 reference

Crossref

https://api.crossref.org/works/10.1126%2FSCIENCE.AAD9421

What curves alpha-solenoids? Evidence for an alpha-helical toroid structure of Rpn1 and Rpn2 proteins of the 26 S proteasome

21 January 2018

1 reference

12 December 2020

Purification of proteasomes, proteasome subcomplexes, and proteasome-associated proteins from budding yeast

1 reference

12 December 2020

Identifying and studying ubiquitin receptors by NMR

1 reference

12 December 2020

Hydrogen exchange-mass spectrometry: optimization of digestion conditions

1 reference

12 December 2020

A series of ubiquitin binding factors connects CDC48/p97 to substrate multiubiquitylation and proteasomal targeting

1 reference

12 December 2020

Preparation of ubiquitinated substrates by the PY motif-insertion method for monitoring 26S proteasome activity

1 reference

12 December 2020

Structure of S5a bound to monoubiquitin provides a model for polyubiquitin recognition

1 reference

12 December 2020

Identifiers

DOI

10.1126/SCIENCE.AAD9421

1 reference

11 August 2017

1 reference

11 August 2017

1 reference