(Q35985499)

11 August 2017

1 reference

title

A survey of current software for haplotype phase inference (English)

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11 August 2017

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Michael E Weale

1

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11 August 2017

1 January 2004

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11 August 2017

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11 August 2017

1

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11 August 2017

2

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11 August 2017

141-144

1 reference

https://scigraph.springernature.com/pub.10.1186/1479-7364-1-2-141

11 August 2017

0 references

cites work

Modeling linkage disequilibrium and identifying recombination hotspots using single-nucleotide polymorphism data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3525072

A comparison of bayesian methods for haplotype reconstruction from population genotype data

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3525072

Estimating haplotype frequencies and standard errors for multiple single nucleotide polymorphisms

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3525072

GCHap: fast MLEs for haplotype frequencies by gene counting

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3525072

Haplotype information and linkage disequilibrium mapping for single nucleotide polymorphisms

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3525072

Selection and evaluation of tagging SNPs in the neuronal-sodium-channel gene SCN1A: implications for linkage-disequilibrium gene mapping

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3525072

Nonparametric disequilibrium mapping of functional sites using haplotypes of multiple tightly linked single-nucleotide polymorphism markers.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3525072

Efficiency of single-nucleotide polymorphism haplotype estimation from pooled DNA.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3525072

Estimation of haplotype frequencies, linkage-disequilibrium measures, and combination of haplotype copies in each pool by use of pooled DNA data

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3525072

Optimal step length EM algorithm (OSLEM) for the estimation of haplotype frequency and its application in lipoprotein lipase genotyping

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3525072

HapScope: a software system for automated and visual analysis of functionally annotated haplotypes

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3525072

Haplotype inference in random population samples.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3525072

Bayesian haplotype inference for multiple linked single-nucleotide polymorphisms

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3525072

Bayesian analysis of haplotypes for linkage disequilibrium mapping

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3525072

A New Statistical Method for Haplotype Reconstruction from Population Data

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3525072

Accuracy of haplotype frequency estimation for biallelic loci, via the expectation-maximization algorithm for unphased diploid genotype data

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3525072

Maximum-likelihood estimation of molecular haplotype frequencies in a diploid population

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3525072

Inference of haplotypes from PCR-amplified samples of diploid populations

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3525072

Gametic phase estimation over large genomic regions using an adaptive window approach

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3525072

HAPLO: a program using the EM algorithm to estimate the frequencies of multi-site haplotypes.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3525072

Haplotype inference by maximum parsimony

11 July 2018

1 reference

https://api.crossref.org/works/10.1186%2F1479-7364-1-2-141

Model-free analysis and permutation tests for allelic associations.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1479-7364-1-2-141

GENECOUNTING: haplotype analysis with missing genotypes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1479-7364-1-2-141

Linkage disequilibrium assessment via log-linear modeling of SNP haplotype frequencies

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1479-7364-1-2-141

Partition-ligation-expectation-maximization algorithm for haplotype inference with single-nucleotide polymorphisms

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1479-7364-1-2-141

Haplotyping and estimation of haplotype frequencies for closely linked biallelic multilocus genetic phenotypes including nuclear family information.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1479-7364-1-2-141

Pedigree disequilibrium tests for multilocus haplotypes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1479-7364-1-2-141

Relative efficiency of ambiguous vs. directly measured haplotype frequencies.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1479-7364-1-2-141

On the use of DNA pooling to estimate haplotype frequencies.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1479-7364-1-2-141

A Markov chain approach to reconstruction of long haplotypes.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3525072

Efficiency of haplotype frequency estimation when nuclear family information is included

24 September 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/15601542

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1479-7364-1-2-141

1 reference

PMC publication ID

3525072

Dimensions Publication ID

11 August 2017

0 references

1 reference

PMC publication ID

3525072

11 August 2017

PubMed publication ID

15601542

1 reference

PMC publication ID

3525072