(Q35986365)

11 August 2017

Accurate binning of metagenomic contigs via automated clustering sequences using information of genomic signatures and marker genes (English)

1 reference

11 August 2017

1 reference

Hsin-Hung Lin

1

1 reference

11 August 2017

Yu-Chieh Liao

series ordinal

2

1 reference

11 August 2017

language of work or name

English

0 references

publication date

12 April 2016

1 reference

11 August 2017

1 reference

11 August 2017

6

1 reference

11 August 2017

24175

1 reference

Creative Commons Attribution 4.0 International

11 August 2017

start time

1 April 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

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cites work

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Distinct Shifts in Microbiota Composition during Drosophila Aging Impair Intestinal Function and Drive Mortality

2 October 2017

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CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes

2 October 2017

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VizBin - an application for reference-independent visualization and human-augmented binning of metagenomic data

2 October 2017

1 reference

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GroopM: an automated tool for the recovery of population genomes from related metagenomes.

2 October 2017

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Binning metagenomic contigs by coverage and composition

2 October 2017

1 reference

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MaxBin: an automated binning method to recover individual genomes from metagenomes using an expectation-maximization algorithm

2 October 2017

1 reference

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Omega: an overlap-graph de novo assembler for metagenomics.

2 October 2017

1 reference

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Alignment-free visualization of metagenomic data by nonlinear dimension reduction.

2 October 2017

1 reference

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Prokka: rapid prokaryotic genome annotation

2 October 2017

1 reference

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Metagenomic species profiling using universal phylogenetic marker genes

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4828714

Comparative metagenomic and rRNA microbial diversity characterization using archaeal and bacterial synthetic communities

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4828714

Ray Meta: scalable de novo metagenome assembly and profiling.

2 October 2017

1 reference

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MOCAT: a metagenomics assembly and gene prediction toolkit

2 October 2017

1 reference

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Time series community genomics analysis reveals rapid shifts in bacterial species, strains, and phage during infant gut colonization

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4828714

MetaVelvet: an extension of Velvet assembler to de novo metagenome assembly from short sequence reads

2 October 2017

1 reference

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Gene and translation initiation site prediction in metagenomic sequences

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4828714

Fast gapped-read alignment with Bowtie 2

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4828714

Assessment of metagenomic assembly using simulated next generation sequencing data

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4828714

Untangling genomes from metagenomes: revealing an uncultured class of marine Euryarchaeota

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4828714

Metagenomic analysis of a permafrost microbial community reveals a rapid response to thaw

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4828714

Meta-IDBA: a de Novo assembler for metagenomic data

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4828714

Metagenomic discovery of biomass-degrading genes and genomes from cow rumen

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4828714

Search and clustering orders of magnitude faster than BLAST

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4828714

Prodigal: prokaryotic gene recognition and translation initiation site identification

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4828714

Community-wide analysis of microbial genome sequence signatures

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4828714

Clustering by passing messages between data points

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4828714

Toward Automatic Reconstruction of a Highly Resolved Tree of Life

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4828714

Identification and assembly of genomes and genetic elements in complex metagenomic samples without using reference genomes

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4828714

MaxBin 2.0: an automated binning algorithm to recover genomes from multiple metagenomic datasets.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4828714

Accurate and universal delineation of prokaryotic species

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4828714

24 September 2018

Identifiers

DOI

10.1038/SREP24175

1 reference

Dimensions Publication ID

11 August 2017

0 references

1 reference

11 August 2017

PubMed publication ID

27067514

1 reference