(Q35991505)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22547823%20AND%20SRC:MED&resulttype=core&format=json

30 January 2020

title

Amino acid coevolution induces an evolutionary Stokes shift (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22547823%20AND%20SRC:MED&resulttype=core&format=json

30 January 2020

0 references

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22547823%20AND%20SRC:MED&resulttype=core&format=json

30 January 2020

Richard A. Goldstein

series ordinal

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22547823%20AND%20SRC:MED&resulttype=core&format=json

30 January 2020

author name string

Grant Thiltgen

series ordinal

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22547823%20AND%20SRC:MED&resulttype=core&format=json

30 January 2020

language of work or name

English

0 references

publication date

30 April 2012

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22547823%20AND%20SRC:MED&resulttype=core&format=json

Proceedings of the National Academy of Sciences of the United States of America

30 January 2020

published in

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22547823%20AND%20SRC:MED&resulttype=core&format=json

30 January 2020

volume

109

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22547823%20AND%20SRC:MED&resulttype=core&format=json

30 January 2020

issue

21

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22547823%20AND%20SRC:MED&resulttype=core&format=json

30 January 2020

page(s)

E1352-9

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22547823%20AND%20SRC:MED&resulttype=core&format=json

Estimating the distribution of selection coefficients from phylogenetic data using sitewise mutation-selection models

30 January 2020

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3361410

Protein 3D structure computed from evolutionary sequence variation

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3361410

Protein topology from predicted residue contacts

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3361410

PSICOV: precise structural contact prediction using sparse inverse covariance estimation on large multiple sequence alignments

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3361410

Role of conformational sampling in computing mutation-induced changes in protein structure and stability

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3361410

Mutation-selection models of coding sequence evolution with site-heterogeneous amino acid fitness profiles

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3361410

Disentangling direct from indirect co-evolution of residues in protein alignments

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3361410

Evidence for an ancient adaptive episode of convergent molecular evolution.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3361410

Assessing the accuracy of ancestral protein reconstruction methods

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3361410

Assessing site-interdependent phylogenetic models of sequence evolution

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3361410

On the relationship among three theories of relaxation in disordered systems

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3361410

Perspective: Sign epistasis and genetic constraint on evolutionary trajectories

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3361410

The application of statistical physics to evolutionary biology

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3361410

Context dependence and coevolution among amino acid residues in proteins.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3361410

A phylogenetic mixture model for detecting pattern-heterogeneity in gene sequence or character-state data

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3361410

A Bayesian mixture model for across-site heterogeneities in the amino-acid replacement process

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3361410

On the probability of fixation of mutant genes in a population

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3361410

A general empirical model of protein evolution derived from multiple protein families using a maximum-likelihood approach

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3361410

Assessing an unknown evolutionary process: effect of increasing site-specific knowledge through taxon addition.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3361410

Dominance, epistasis and the genetics of postzygotic isolation

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3361410

Three-dimensional structure of a mammalian purple acid phosphatase at 2.2 A resolution with a mu-(hydr)oxo bridged di-iron center

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3361410

Coevolving protein residues: maximum likelihood identification and relationship to structure.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3361410

Context-dependent optimal substitution matrices

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3361410

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3361410

A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3361410

The rapid generation of mutation data matrices from protein sequences

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3361410

Evolutionary distances for protein-coding sequences: modeling site-specific residue frequencies

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3361410

Environment-specific amino acid substitution tables: tertiary templates and prediction of protein folds

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3361410

Detecting coevolving amino acid sites using Bayesian mutational mapping

27 July 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1120084109

Combining protein evolution and secondary structure

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1120084109

Maximum-likelihood phylogenetic analysis under a covarion-like model.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1120084109

Mathematical elegance with biochemical realism: the covarion model of molecular evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1120084109

Dobzhansky-Muller incompatibilities and adaptation to a shared environment

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1120084109

Compensated deleterious mutations in insect genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1120084109

The evolution and evolutionary consequences of marginal thermostability in proteins.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1120084109

Phylogenetic estimation of context-dependent substitution rates by maximum likelihood

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3361410

Models of natural mutations including site heterogeneity

23 September 2018

1 reference

12 December 2020

The evolution of postzygotic isolation: accumulating Dobzhansky-Muller incompatibilities

1 reference

12 December 2020

Coevolutionary patterns in cytochrome c oxidase subunit I depend on structural and functional context

1 reference

12 December 2020

Site interdependence attributed to tertiary structure in amino acid sequence evolution

1 reference

12 December 2020

Identifiers

DOI

10.1073/PNAS.1120084109

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22547823%20AND%20SRC:MED&resulttype=core&format=json

30 January 2020

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22547823%20AND%20SRC:MED&resulttype=core&format=json

30 January 2020

PubMed publication ID

22547823

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22547823%20AND%20SRC:MED&resulttype=core&format=json