(Q36060828)

11 August 2017

RNA regulatory networks diversified through curvature of the PUF protein scaffold (English)

1 reference

11 August 2017

Christopher P Lapointe

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26364903%20AND%20SRC:MED&resulttype=core&format=json

2 June 2020

Zachary T Campbell

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26364903%20AND%20SRC:MED&resulttype=core&format=json

2 June 2020

author name string

Daniel Wilinski

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26364903%20AND%20SRC:MED&resulttype=core&format=json

2 June 2020

Chen Qiu

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26364903%20AND%20SRC:MED&resulttype=core&format=json

2 June 2020

Markus Nevil

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26364903%20AND%20SRC:MED&resulttype=core&format=json

2 June 2020

Traci M Tanaka Hall

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26364903%20AND%20SRC:MED&resulttype=core&format=json

2 June 2020

Marvin Wickens

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26364903%20AND%20SRC:MED&resulttype=core&format=json

2 June 2020

language of work or name

English

0 references

publication date

14 September 2015

1 reference

11 August 2017

Nature Communications

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26364903%20AND%20SRC:MED&resulttype=core&format=json

2 June 2020

volume

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26364903%20AND%20SRC:MED&resulttype=core&format=json

2 June 2020

page(s)

8213

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26364903%20AND%20SRC:MED&resulttype=core&format=json

Creative Commons Attribution 4.0 International

2 June 2020

copyright license

start time

14 September 2015

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

describes a project that uses

ImageQuant

1 reference

11 June 2022

https://www.ebi.ac.uk/europepmc/webservices/rest/PMC4570272/fullTextXML

based on heuristic

inferred from PubMed Central ID database lookup

exact match

https://scigraph.springernature.com/pub.10.1038/ncomms9213

0 references

cites work

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2 October 2017

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RNA protein interaction in neurons

2 October 2017

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Pervasive and dynamic protein binding sites of the mRNA transcriptome in Saccharomyces cerevisiae

2 October 2017

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Cooperativity in RNA-protein interactions: global analysis of RNA binding specificity

2 October 2017

1 reference

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Cell-free formation of RNA granules: low complexity sequence domains form dynamic fibers within hydrogels

2 October 2017

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Patterns and plasticity in RNA-protein interactions enable recruitment of multiple proteins through a single site

2 October 2017

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2 October 2017

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Fast gapped-read alignment with Bowtie 2

2 October 2017

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Saccharomyces Genome Database: the genomics resource of budding yeast

2 October 2017

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2 October 2017

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Mapping in vivo protein-RNA interactions at single-nucleotide resolution from HITS-CLIP data

2 October 2017

1 reference

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PUF proteins: repression, activation and mRNA localization

2 October 2017

1 reference

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Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences

2 October 2017

1 reference

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Manipulation of FASTQ data with Galaxy

2 October 2017

1 reference

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Translational repression by PUF proteins in vitro

2 October 2017

1 reference

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Transcriptome-wide identification of RNA-binding protein and microRNA target sites by PAR-CLIP

2 October 2017

1 reference

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Genome-wide analysis of mRNA targets for Caenorhabditis elegans FBF, a conserved stem cell regulator

2 October 2017

1 reference

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PHENIX: a comprehensive Python-based system for macromolecular structure solution

2 October 2017

1 reference

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A 5' cytosine binding pocket in Puf3p specifies regulation of mitochondrial mRNAs

2 October 2017

1 reference

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HITS-CLIP yields genome-wide insights into brain alternative RNA processing

2 October 2017

1 reference

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Yeast mitochondrial biogenesis: a role for the PUF RNA-binding protein Puf3p in mRNA localization

2 October 2017

1 reference

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Puf1p acts in combination with other yeast Puf proteins to control mRNA stability

2 October 2017

1 reference

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RNA regulons: coordination of post-transcriptional events

2 October 2017

1 reference

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CPEB: a life in translation

2 October 2017

1 reference

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MolProbity: all-atom contacts and structure validation for proteins and nucleic acids

2 October 2017

1 reference

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Control of signaling in a MAP-kinase pathway by an RNA-binding protein

2 October 2017

1 reference

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Engineering RNA sequence specificity of Pumilio repeats.

2 October 2017

1 reference

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Auto-rickshaw: an automated crystal structure determination platform as an efficient tool for the validation of an X-ray diffraction experiment

2 October 2017

1 reference

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RNA-protein interactions in the yeast three-hybrid system: affinity, sensitivity, and enhanced library screening

2 October 2017

1 reference

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Coot: model-building tools for molecular graphics

2 October 2017

1 reference

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Extensive association of functionally and cytotopically related mRNAs with Puf family RNA-binding proteins in yeast

2 October 2017

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CLIP identifies Nova-regulated RNA networks in the brain

2 October 2017

1 reference

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Cytoscape: a software environment for integrated models of biomolecular interaction networks

2 October 2017

1 reference

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A PUF family portrait: 3'UTR regulation as a way of life

2 October 2017

1 reference

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Saccharomyces cerevisiae MPT5 and SSD1 function in parallel pathways to promote cell wall integrity

2 October 2017

1 reference

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Post-transcriptional regulation through the HO 3'-UTR by Mpt5, a yeast homolog of Pumilio and FBF

2 October 2017

1 reference

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Identifying mRNA subsets in messenger ribonucleoprotein complexes by using cDNA arrays

2 October 2017

1 reference

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Ulp1-SUMO crystal structure and genetic analysis reveal conserved interactions and a regulatory element essential for cell growth in yeast

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4570272

Saccharomyces cerevisiae Mpt5p interacts with Sst2p and plays roles in pheromone sensitivity and recovery from pheromone arrest

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4570272

Redistribution of silencing proteins from telomeres to the nucleolus is associated with extension of life span in S. cerevisiae.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4570272

A three-hybrid system to detect RNA-protein interactions in vivo

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4570272

Fitting a mixture model by expectation maximization to discover motifs in biopolymers

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4570272

Natural history and evolutionary principles of gene duplication in fungi

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4570272

A three-hybrid screen identifies mRNAs controlled by a regulatory protein

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4570272

PUF protein-mediated deadenylation is catalyzed by Ccr4p.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4570272

Processing of X-ray diffraction data collected in oscillation mode

23 September 2018

1 reference

Crossref

https://api.crossref.org/works/10.1038%2FNCOMMS9213

Determining the RNA specificity and targets of RNA-binding proteins using a three-hybrid system

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/26364903

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Expanding the RNA-recognition code of PUF proteins

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/26364903

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1038/NCOMMS9213

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26364903%20AND%20SRC:MED&resulttype=core&format=json

2 June 2020

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26364903%20AND%20SRC:MED&resulttype=core&format=json

2 June 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26364903%20AND%20SRC:MED&resulttype=core&format=json