(Q36069196)

12 August 2017

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title

Space in systems biology of signaling pathways--towards intracellular molecular crowding in silico (English)

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12 August 2017

Kouichi Takahashi

1

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12 August 2017

Satya Nanda Vel Arjunan

series ordinal

2

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12 August 2017

Masaru Tomita

series ordinal

3

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12 August 2017

language of work or name

English

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publication date

1 March 2005

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12 August 2017

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12 August 2017

579

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12 August 2017

8

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12 August 2017

1783-1788

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Signaling in small subcellular volumes. I. Stochastic and diffusion effects on individual pathways

12 August 2017

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2005.01.072

How crowded is the cytoplasm?

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2005.01.072

Estimation of macromolecule concentrations and excluded volume effects for the cytoplasm of Escherichia coli

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2005.01.072

Anomalous subdiffusion is a measure for cytoplasmic crowding in living cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2005.01.072

Reaction kinetics in intracellular environments with macromolecular crowding: simulations and rate laws

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2005.01.072

The influence of macromolecular crowding and macromolecular confinement on biochemical reactions in physiological media

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2005.01.072

Control, exploitation and tolerance of intracellular noise

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2005.01.072

A general method for numerically simulating the stochastic time evolution of coupled chemical reactions

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2005.01.072

Location and dynamics of basic peptides at the membrane interface: electron paramagnetic resonance spectroscopy of tetramethyl-piperidine-N-oxyl-4-amino-4-carboxylic acid-labeled peptides

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2005.01.072

Atomistic simulations of competition between substrates binding to an enzyme

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2005.01.072

Local molecular dynamics with coulombic interactions.

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2005.01.072

Rational design of solution additives for the prevention of protein aggregation

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2005.01.072

Self-assembly of peptides into a beta-barrel motif

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2005.01.072

Simulating Microscopic Hydrodynamic Phenomena with Dissipative Particle Dynamics

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2005.01.072

Discrete-element method simulations: from micro to macro scales.

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2005.01.072

Differential hydrophobicity drives self-assembly in Huntington's disease

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2005.01.072

A general computational framework for modeling cellular structure and function

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2005.01.072

Atomic-level observation of macromolecular crowding effects: escape of a protein from the GroEL cage

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2005.01.072

Stochastic simulation of chemical reactions with spatial resolution and single molecule detail.

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2005.01.072

Simulated diffusion of phosphorylated CheY through the cytoplasm of Escherichia coli.

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2005.01.072

Monte carlo simulations of enzyme reactions in two dimensions: fractal kinetics and spatial segregation.

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2005.01.072

A spatially extended stochastic model of the bacterial chemotaxis signalling pathway

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2005.01.072

Studies of effects of macromolecular crowding and confinement on protein folding and protein stability

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2005.01.072

Lattice Boltzmann simulation of chemical dissolution in porous media

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2005.01.072

Efficient Exact Stochastic Simulation of Chemical Systems with Many Species and Many Channels

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2005.01.072

SmartCell, a framework to simulate cellular processes that combines stochastic approximation with diffusion and localisation: analysis of simple networks.

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2005.01.072

Anomalous protein diffusion in living cells as seen by fluorescence correlation spectroscopy

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2005.01.072

Mobility measurement by analysis of fluorescence photobleaching recovery kinetics

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2005.01.072

A multi-algorithm, multi-timescale method for cell simulation.

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2005.01.072

10.1016/J.FEBSLET.2005.01.072

21 January 2018

Identifiers

DOI

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12 August 2017

1 reference