(Q36120928)

12 August 2017

FLEXc: protein flexibility prediction using context-based statistics, predicted structural features, and sequence information (English)

1 reference

12 August 2017

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Ashraf Yaseen

1

1 reference

12 August 2017

Mais Nijim

2

1 reference

12 August 2017

Brandon Williams

3

1 reference

12 August 2017

Lei Qian

4

1 reference

12 August 2017

Min Li

5

1 reference

12 August 2017

Jianxin Wang

6

1 reference

12 August 2017

Yaohang Li

7

1 reference

12 August 2017

31 August 2016

1 reference

12 August 2017

1 reference

12 August 2017

17 Suppl 8

1 reference

12 August 2017

281

1 reference

https://scigraph.springernature.com/pub.10.1186/s12859-016-1117-3

12 August 2017

0 references

cites work

Template-based C8-SCORPION: a protein 8-state secondary structure prediction method using structural information and context-based features

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5009531

Dinosolve: a protein disulfide bonding prediction server using context-based features to enhance prediction accuracy

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5009531

Predicting protein flexibility through the prediction of local structures

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5009531

Protein stability, flexibility and function

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5009531

Predicting intrinsic disorder in proteins: an overview

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5009531

The unfoldomics decade: an update on intrinsically disordered proteins.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5009531

The dynamic energy landscape of dihydrofolate reductase catalysis

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5009531

An NMR perspective on enzyme dynamics

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5009531

Length-dependent prediction of protein intrinsic disorder.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5009531

Intrinsic dynamics of an enzyme underlies catalysis

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5009531

Protein flexibility and rigidity predicted from sequence

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5009531

Prediction and Functional Analysis of Native Disorder in Proteins from the Three Kingdoms of Life

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5009531

Protein folding and misfolding

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5009531

PISCES: a protein sequence culling server

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5009531

Implications of protein flexibility for drug discovery

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5009531

The role of dynamics in enzyme activity

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5009531

PABMB Lecture. Protein dynamics, folding and misfolding: from basic physical chemistry to human conformational diseases

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5009531

Biomedical implications of protein folding and misfolding

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5009531

Protein Data Bank (PDB): database of three-dimensional structural information of biological macromolecules

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5009531

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5009531

Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5009531

Prediction of temperature factors from protein sequence

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5009531

Calculation of conformational ensembles from potentials of mean force. An approach to the knowledge-based prediction of local structures in globular proteins.

2 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5009531

Context-based features enhance protein secondary structure prediction accuracy

2 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5009531

Robust prediction of B-factor profile from sequence using two-stage SVR based on random forest feature selection.

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5009531

Prediction of protein B-factor profiles.

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5009531

Protein flexibility and intrinsic disorder

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5009531

BIOCHEMISTRY: How Do Proteins Interact?

23 September 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12859-016-1117-3

Prediction of Local Structural Stabilities of Proteins from Their Amino Acid Sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12859-016-1117-3

Relationship of protein flexibility to thermostability

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12859-016-1117-3

Accuracy of protein flexibility predictions

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12859-016-1117-3

Sequence-specific dynamics modulate recognition specificity in WW domains

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/27587065

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Flexibility analysis of enzyme active sites by crystallographic temperature factors

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/27587065

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/S12859-016-1117-3

1 reference

journals/bmcbi/YaseenNWQLWL16

12 August 2017

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

0 references

1 reference

12 August 2017

PubMed publication ID

27587065

1 reference