(Q36158971)

12 August 2017

Exceptionally fast self-cleavage by a Neurospora Varkud satellite ribozyme (English)

1 reference

12 August 2017

0 references

Ricardo Zamel

1

1 reference

12 August 2017

Alan Poon

2

1 reference

12 August 2017

Dominic Jaikaran

3

1 reference

12 August 2017

Angela Andersen

4

1 reference

12 August 2017

Joan Olive

5

1 reference

12 August 2017

Diane De Abreu

6

1 reference

12 August 2017

Richard A Collins

7

1 reference

12 August 2017

language of work or name

English

0 references

publication date

30 January 2004

1 reference

Proceedings of the National Academy of Sciences of the United States of America

12 August 2017

1 reference

12 August 2017

101

1 reference

12 August 2017

6

1 reference

12 August 2017

1467-1472

1 reference

describes a project that uses

12 August 2017

ImageQuant

1 reference

11 June 2022

https://www.ebi.ac.uk/europepmc/webservices/rest/PMC341743/fullTextXML

based on heuristic

inferred from PubMed Central ID database lookup

cites work

Peripheral regions of natural hammerhead ribozymes greatly increase their self-cleavage activity

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=341743

Sequence elements outside the hammerhead ribozyme catalytic core enable intracellular activity

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=341743

2 October 2017

Ribozyme speed limits

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=341743

Ionization of a Critical Adenosine Residue in theNeurosporaVarkud Satellite Ribozyme Active Site†

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=341743

Mechanistic considerations for general acid-base catalysis by RNA: revisiting the mechanism of the hairpin ribozyme

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=341743

The structure and active site of the Varkud satellite ribozyme

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=341743

The Neurospora Varkud satellite ribozyme

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=341743

4-thio-U cross-linking identifies the active site of the VS ribozyme

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=341743

An efficient ligation reaction promoted by a Varkud Satellite ribozyme with extended 5'- and 3'-termini

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=341743

Rapid formation of a solvent-inaccessible core in the Neurospora Varkud satellite ribozyme

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=341743

Structure and function of the small ribozymes

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=341743

Structural diversity of self-cleaving ribozymes

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=341743

Structural basis for heterogeneous kinetics: reengineering the hairpin ribozyme

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=341743

Program DYNAFIT for the analysis of enzyme kinetic data: application to HIV proteinase

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=341743

A secondary-structure model for the self-cleaving region of Neurospora VS RNA.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=341743

Oligoribonucleotide synthesis using T7 RNA polymerase and synthetic DNA templates

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=341743

Catalysis of RNA cleavage by the Tetrahymena thermophila ribozyme. 1. Kinetic description of the reaction of an RNA substrate complementary to the active site

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=341743

A site-specific self-cleavage reaction performed by a novel RNA in Neurospora mitochondria

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=341743

RNA-mediated ligation of self-cleavage products of a Neurospora mitochondrial plasmid transcript

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=341743

A common speed limit for RNA-cleaving ribozymes and deoxyribozymes

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=341743

Mechanistic aspects of enzymatic catalysis: lessons from comparison of RNA and protein enzymes

2 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=341743

Pre-steady-state and stopped-flow fluorescence analysis of Escherichia coli ribonuclease III: insights into mechanism and conformational changes associated with binding and catalysis

2 July 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0305753101

Metal ion requirements for structure and catalysis of an RNA ligase ribozyme.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0305753101

Nucleotide sequence requirements for self-cleavage of Neurospora VS RNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0305753101

Kinetics of RNA Degradation by Specific Base Catalysis of Transesterification Involving the 2‘-Hydroxyl Group

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0305753101

Non-enzymatic cleavage and ligation of RNAs complementary to a plant virus satellite RNA

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0305753101

Kinetic studies on turtle pancreatic ribonuclease: a comparative study of the base specificities of the B2 and P0 sites of bovine pancreatic ribonuclease A and turtle pancreatic ribonuclease

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0305753101

A kinetic mechanism for cleavage of precursor tRNA(Asp) catalyzed by the RNA component of Bacillus subtilis ribonuclease P

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0305753101

Rearrangement of a stable RNA secondary structure during VS ribozyme catalysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0305753101

Reaction conditions and kinetics of self-cleavage of a ribozyme derived from Neurospora VS RNA

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0305753101

The internal equilibrium of the hairpin ribozyme: temperature, ion and pH effects

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0305753101

A covalent crosslink converts the hammerhead ribozyme from a ribonuclease to an RNA ligase

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0305753101

21 January 2018

Identifiers

DOI

10.1073/PNAS.0305753101

1 reference

12 August 2017

0 references

1 reference

12 August 2017

1 reference