(Q36160854)

12 August 2017

How protein thermodynamics and folding mechanisms are altered by the chaperonin cage: molecular simulations (English)

1 reference

12 August 2017

0 references

0 references

Fumiko Takagi

1

1 reference

12 August 2017

Nobuyasu Koga

series ordinal

2

1 reference

12 August 2017

Shoji Takada

series ordinal

3

1 reference

12 August 2017

language of work or name

English

0 references

publication date

28 August 2003

1 reference

Proceedings of the National Academy of Sciences of the United States of America

12 August 2017

1 reference

12 August 2017

100

1 reference

12 August 2017

20

1 reference

12 August 2017

11367-11372

1 reference

Simulations of beta-hairpin folding confined to spherical pores using distributed computing

12 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=208763

Molecular chaperones in the cytosol: from nascent chain to folded protein

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=208763

Chaperonin-mediated protein folding

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=208763

Molecular confinement influences protein structure and enhances thermal protein stability

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=208763

How native-state topology affects the folding of dihydrofolate reductase and interleukin-1beta

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=208763

Implications of macromolecular crowding for protein assembly.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=208763

Go-ing for the prediction of protein folding mechanisms

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=208763

GroEL recognises sequential and non-sequential linear structural motifs compatible with extended beta-strands and alpha-helices

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=208763

Important role of hydrogen bonds in the structurally polarized transition state for folding of the src SH3 domain

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=208763

Contact order, transition state placement and the refolding rates of single domain proteins.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=208763

The crystal structure of the asymmetric GroEL-GroES-(ADP)7 chaperonin complex

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=208763

Chaperonin-facilitated protein folding: optimization of rate and yield by an iterative annealing mechanism

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=208763

Statistical mechanics of kinetic proofreading in protein folding in vivo

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=208763

Residues in chaperonin GroEL required for polypeptide binding and release

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=208763

The crystal structure of the bacterial chaperonin GroEL at 2.8 A

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=208763

Navigating the folding routes

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=208763

Funnels, pathways, and the energy landscape of protein folding: a synthesis

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=208763

Mechanism of GroEL action: Productive release of polypeptide from a sequestered position under groes

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=208763

Theoretical Studies of Protein Folding

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=208763

Spin glasses and the statistical mechanics of protein folding

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=208763

The nature of folded states of globular proteins

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=208763

Studies on protein folding, unfolding and fluctuations by computer simulation. I. The effect of specific amino acid sequence represented by specific inter-unit interactions

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=208763

Effects of macromolecular crowding on protein folding and aggregation studied by density functional theory: statics.

2 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=208763

Roles of native topology and chain-length scaling in protein folding: a simulation study with a Go-like model.

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=208763

Topological and energetic factors: what determines the structural details of the transition state ensemble and "en-route" intermediates for protein folding? An investigation for small globular proteins

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=208763

Chaperonin function: folding by forced unfolding

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=208763

Distinct actions of cis and trans ATP within the double ring of the chaperonin GroEL.

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=208763

THE weighted histogram analysis method for free-energy calculations on biomolecules. I. The method

23 September 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1831920100

The oligomeric structure of GroEL/GroES is required for biologically significant chaperonin function in protein folding

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1831920100

Dual Function of Protein Confinement in Chaperonin-Assisted Protein Folding

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1831920100

Stabilization of Proteins in Confined Spaces†

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1831920100

Identification of in vivo substrates of the chaperonin GroEL

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1831920100

GroEL-mediated protein folding proceeds by multiple rounds of binding and release of nonnative forms

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/12947041

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Structure and function in GroEL-mediated protein folding

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/12947041

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Exploring the kinetic requirements for enhancement of protein folding rates in the GroEL cavity

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/12947041

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1073/PNAS.1831920100

1 reference

12 August 2017

0 references

1 reference

12 August 2017

PubMed publication ID

12947041

1 reference