(Q36312053)

13 August 2017

OrbId: Origin-based identification of microRNA targets (English)

1 reference

13 August 2017

1 reference

Teresa J Filshtein

1

1 reference

13 August 2017

Craig O Mackenzie

2

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13 August 2017

Maurice D Dale

3

1 reference

13 August 2017

Paul S Dela-Cruz

4

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13 August 2017

Dale M Ernst

5

1 reference

13 August 2017

Edward A Frankenberger

6

1 reference

13 August 2017

Chunyan He

7

1 reference

13 August 2017

Kaylee L Heath

8

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13 August 2017

Andria S Jones

9

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13 August 2017

Daniel K Jones

10

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13 August 2017

Edward R King

11

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13 August 2017

Maggie B Maher

12

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13 August 2017

Travis J Mitchell

13

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13 August 2017

Rachel R Morgan

14

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13 August 2017

Sirisha Sirobhushanam

15

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13 August 2017

Scott D Halkyard

16

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13 August 2017

Kiran B Tiwari

17

1 reference

13 August 2017

David A Rubin

18

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13 August 2017

Glen M Borchert

19

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13 August 2017

Erik D Larson

20

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13 August 2017

1 July 2012

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13 August 2017

Mobile genetic elements

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13 August 2017

2

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13 August 2017

4

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13 August 2017

184-192

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Repetitive elements may comprise over two-thirds of the human genome

13 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3469430

Comprehensive analysis of microRNA genomic loci identifies pervasive repetitive-element origins

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3469430

Practical Aspects of microRNA Target Prediction

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3469430

30 September 2017

miRNAs in human cancer

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3469430

miRBase: integrating microRNA annotation and deep-sequencing data

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3469430

Desperately seeking microRNA targets

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3469430

Conserved microRNA targeting in Drosophila is as widespread in coding regions as in 3'UTRs

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3469430

miR-28 is a thrombopoietin receptor targeting microRNA detected in a fraction of myeloproliferative neoplasm patient platelets.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3469430

Survey of Computational Algorithms for MicroRNA Target Prediction

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3469430

MicroRNAs--targeting and target prediction

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3469430

Got target? Computational methods for microRNA target prediction and their extension

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3469430

Marsupial-specific microRNAs evolved from marsupial-specific transposable elements

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3469430

New class of microRNA targets containing simultaneous 5'-UTR and 3'-UTR interaction sites

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3469430

Evidence for co-evolution between human microRNAs and Alu-repeats

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3469430

MicroRNA-10a binds the 5'UTR of ribosomal protein mRNAs and enhances their translation

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3469430

Molecular Evolution of a Primate-Specific microRNA Family

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3469430

The role of site accessibility in microRNA target recognition

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3469430

Target mRNAs are repressed as efficiently by microRNA-binding sites in the 5' UTR as in the 3' UTR

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3469430

A family of human microRNA genes from miniature inverted-repeat transposable elements

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3469430

RNA polymerase III transcribes human microRNAs

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3469430

Annotation, submission and screening of repetitive elements in Repbase: RepbaseSubmitter and Censor

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3469430

A pattern-based method for the identification of MicroRNA binding sites and their corresponding heteroduplexes

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3469430

Complications in mammalian microRNA target prediction

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3469430

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3469430

Repbase Update, a database of eukaryotic repetitive elements

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3469430

BioMart and Bioconductor: a powerful link between biological databases and microarray data analysis

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3469430

Combinatorial microRNA target predictions

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3469430

Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3469430

Rfam: annotating non-coding RNAs in complete genomes

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3469430

30 September 2017

Human MicroRNA targets

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3469430

A population-based statistical approach identifies parameters characteristic of human microRNA-mRNA interactions

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3469430

A combined computational-experimental approach predicts human microRNA targets

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3469430

Rfam: an RNA family database

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3469430

A microRNA in a multiple-turnover RNAi enzyme complex

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3469430

Both natural and designed micro RNAs can inhibit the expression of cognate mRNAs when expressed in human cells

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3469430

Micro RNAs are complementary to 3' UTR sequence motifs that mediate negative post-transcriptional regulation

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3469430

An extensive class of small RNAs in Caenorhabditis elegans

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3469430

An abundant class of tiny RNAs with probable regulatory roles in Caenorhabditis elegans

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3469430

Identification of novel genes coding for small expressed RNAs

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3469430

The C. elegans heterochronic gene lin-4 encodes small RNAs with antisense complementarity to lin-14

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3469430

Mechanism of translational regulation by miR-2 from sites in the 5' untranslated region or the open reading frame

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3469430

Small RNAs from MITE-derived stem-loop precursors regulate abscisic acid signaling and abiotic stress responses in rice.

30 September 2017

1 reference

Abundant conserved microRNA target sites in the 5'-untranslated region and coding sequence

21 January 2018

1 reference

Mammalian microRNAs derived from genomic repeats

21 January 2018

1 reference

Alu elements within human mRNAs are probable microRNA targets

21 January 2018

1 reference

Cloning of novel repeat-associated small RNAs derived from hairpin precursors in Oryza sativa

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23087843

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

A Genome-Wide Map of Conserved MicroRNA Targets in C. elegans

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23087843

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.4161/MGE.21617

1 reference

13 August 2017

1 reference

13 August 2017

1 reference