(Q36314706)

13 August 2017

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title

Associating phenotypes with molecular events: recent statistical advances and challenges underpinning microarray experiments (English)

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13 August 2017

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Yulan Liang

1

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13 August 2017

Arpad Kelemen

series ordinal

2

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13 August 2017

publication date

15 November 2005

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Functional and Integrative Genomics

13 August 2017

published in

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13 August 2017

volume

6

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13 August 2017

issue

1

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13 August 2017

page(s)

1-13

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A variance-stabilizing transformation for gene-expression microarray data

13 August 2017

cites work

1 reference

Crossref

https://api.crossref.org/works/10.1007%2FS10142-005-0006-Z

Power and sample size for DNA microarray studies

21 January 2018

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A prediction-based resampling method for estimating the number of clusters in a dataset

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SVDMAN--singular value decomposition analysis of microarray data.

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Clustering gene-expression data with repeated measurements

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Nonparametric methods for identifying differentially expressed genes in microarray data

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Identifying biological themes within lists of genes with EASE

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A comparative analysis of transcript abundance using SAGE and Affymetrix arrays

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Assessing gene significance from cDNA microarray expression data via mixed models

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12 December 2020

Cluster analysis and display of genome-wide expression patterns

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12 December 2020

Discovering genotypes underlying human phenotypes: past successes for mendelian disease, future approaches for complex disease

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12 December 2020

From patterns to pathways: gene expression data analysis comes of age.

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Empirical Bayes estimation of gene-specific effects in micro-array research

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12 December 2020

The Bayesian revolution in genetics

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Model choice in gene mapping: what and why.

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12 December 2020

Variable selection and pattern recognition with gene expression data generated by the microarray technology.

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12 December 2020

Bootstrapping cluster analysis: assessing the reliability of conclusions from microarray experiments

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12 December 2020

Importance of replication in microarray gene expression studies: statistical methods and evidence from repetitive cDNA hybridizations

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12 December 2020

Analysis of variance for gene expression microarray data

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12 December 2020

Comparisons and validation of statistical clustering techniques for microarray gene expression data

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12 December 2020

Bayesian hierarchical model for identifying changes in gene expression from microarray experiments.

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12 December 2020

Statistical issues and methods for meta-analysis of microarray data: a case study in prostate cancer

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12 December 2020

Cluster analysis of gene expression dynamics

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12 December 2020

Error detection for genetic data, using likelihood methods

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12 December 2020

A Bayesian approach to reconstructing genetic regulatory networks with hidden factors

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12 December 2020

LSimpute: accurate estimation of missing values in microarray data with least squares methods

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12 December 2020

How many replicates of arrays are required to detect gene expression changes in microarray experiments? A mixture model approach

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12 December 2020

A Bayesian framework for combining heterogeneous data sources for gene function prediction (in Saccharomyces cerevisiae).

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12 December 2020

Multivariate search for differentially expressed gene combinations

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12 December 2020

Comparing functional annotation analyses with Catmap

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12 December 2020

Permutation tests for multiple loci affecting a quantitative character

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12 December 2020

Model-based analysis of oligonucleotide arrays: expression index computation and outlier detection

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Spotted long oligonucleotide arrays for human gene expression analysis.

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Use of within-array replicate spots for assessing differential expression in microarray experiments

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Systematic benchmarking of microarray data classification: assessing the role of non-linearity and dimensionality reduction

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12 December 2020

Principal component analysis for clustering gene expression data.

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12 December 2020

Reproducibility of gene expression across generations of Affymetrix microarrays

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12 December 2020

A comparative review of statistical methods for discovering differentially expressed genes in replicated microarray experiments

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12 December 2020

Linear models and empirical bayes methods for assessing differential expression in microarray experiments

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Accounting for variability in the use of permutation testing to detect quantitative trait loci.

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Classification and diagnostic prediction of cancers using gene expression profiling and artificial neural networks

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12 December 2020

Normalization for cDNA microarray data: a robust composite method addressing single and multiple slide systematic variation

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Mapping and analysis of quantitative trait loci in experimental populations

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12 December 2020

Microarrays: how many do you need?

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12 December 2020

Model-based methods for identifying periodically expressed genes based on time course microarray gene expression data

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12 December 2020

Hierarchical Bayesian neural network for gene expression temporal patterns

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12 December 2020

DAVID: Database for Annotation, Visualization, and Integrated Discovery

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12 December 2020

Methods for assessing reproducibility of clustering patterns observed in analyses of microarray data

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12 December 2020

A Bayesian framework for the analysis of microarray expression data: regularized t -test and statistical inferences of gene changes

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'Gene shaving' as a method for identifying distinct sets of genes with similar expression patterns

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Bayesian methods for quantitative trait loci mapping based on model selection: approximate analysis using the Bayesian information criterion.

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12 December 2020

Knowledge-based analysis of microarray gene expression data by using support vector machines

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12 December 2020

Pattern recognition in gene expression profiling using DNA array: a comparative study of different statistical methods applied to cancer classification

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Standardizing global gene expression analysis between laboratories and across platforms.

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12 December 2020

Empirical threshold values for quantitative trait mapping

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12 December 2020

Calculation of the minimum number of replicate spots required for detection of significant gene expression fold change in microarray experiments

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12 December 2020

A cross-study comparison of gene expression studies for the molecular classification of lung cancer

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12 December 2020

Singular value decomposition for genome-wide expression data processing and modeling

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12 December 2020

Exploring the conditional coregulation of yeast gene expression through fuzzy k-means clustering

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12 December 2020

Nonparametric methods for analyzing replication origins in genomewide data

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12 December 2020

Large-scale meta-analysis of cancer microarray data identifies common transcriptional profiles of neoplastic transformation and progression

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12 December 2020

The promise and problems of meta-analysis

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12 December 2020

Tclass: tumor classification system based on gene expression profile

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12 December 2020

Gene expression meets genetics

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12 December 2020

Significance analysis of microarrays applied to the ionizing radiation response

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12 December 2020

Evaluation of gene expression measurements from commercial microarray platforms

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12 December 2020

On differential variability of expression ratios: improving statistical inference about gene expression changes from microarray data

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12 December 2020

Independence and reproducibility across microarray platforms

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12 December 2020

GOstat: find statistically overrepresented Gene Ontologies within a group of genes

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12 December 2020

Statistical tests for differential expression in cDNA microarray experiments

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12 December 2020

Missing value estimation methods for DNA microarrays

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12 December 2020

Interpreting patterns of gene expression with self-organizing maps: methods and application to hematopoietic differentiation

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12 December 2020

Fundamental patterns underlying gene expression profiles: simplicity from complexity

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12 December 2020

Coexpression analysis of human genes across many microarray data sets

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12 December 2020

Confidence intervals in QTL mapping by bootstrapping

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12 December 2020

Summaries of Affymetrix GeneChip probe level data

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12 December 2020

Molecular classification of cancer: class discovery and class prediction by gene expression monitoring

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12 December 2020

Multiple-laboratory comparison of microarray platforms

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12 December 2020

Pitfalls in the use of DNA microarray data for diagnostic and prognostic classification

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12 December 2020

Differential and trajectory methods for time course gene expression data

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12 December 2020

Covariate adjustment in the analysis of microarray data from clinical studies

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12 December 2020

Issues in cDNA microarray analysis: quality filtering, channel normalization, models of variations and assessment of gene effects

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12 December 2020

Genetic algorithms applied to multi-class prediction for the analysis of gene expression data

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12 December 2020

Bayesian automatic relevance determination algorithms for classifying gene expression data

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12 December 2020

10.1007/S10142-005-0006-Z

Identifiers

DOI

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13 August 2017

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