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NanoSim: nanopore sequence read simulator based on statistical characterization
scientific article
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instance of
scholarly article
1 reference
stated in
Europe PubMed Central
PMCID
5530317
retrieved
13 August 2017
title
NanoSim: nanopore sequence read simulator based on statistical characterization
(English)
1 reference
stated in
Europe PubMed Central
PMCID
5530317
retrieved
13 August 2017
main subject
statistics
0 references
author
Inanc Birol
series ordinal
4
1 reference
stated in
Europe PubMed Central
PMCID
5530317
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28327957%20AND%20SRC:MED&resulttype=core&format=json
retrieved
2 June 2020
author name string
Chen Yang
series ordinal
1
1 reference
stated in
Europe PubMed Central
PMCID
5530317
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28327957%20AND%20SRC:MED&resulttype=core&format=json
retrieved
2 June 2020
Justin Chu
series ordinal
2
1 reference
stated in
Europe PubMed Central
PMCID
5530317
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28327957%20AND%20SRC:MED&resulttype=core&format=json
retrieved
2 June 2020
René L Warren
series ordinal
3
1 reference
stated in
Europe PubMed Central
PMCID
5530317
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28327957%20AND%20SRC:MED&resulttype=core&format=json
retrieved
2 June 2020
publication date
24 February 2017
1 reference
stated in
Europe PubMed Central
PMCID
5530317
retrieved
13 August 2017
number of pages
6
1 reference
based on heuristic
inferred from page(s)
published in
GigaScience
1 reference
stated in
Europe PubMed Central
PMCID
5530317
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28327957%20AND%20SRC:MED&resulttype=core&format=json
retrieved
2 June 2020
volume
6
1 reference
stated in
Europe PubMed Central
PMCID
5530317
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28327957%20AND%20SRC:MED&resulttype=core&format=json
retrieved
2 June 2020
issue
4
1 reference
stated in
Europe PubMed Central
PMCID
5530317
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28327957%20AND%20SRC:MED&resulttype=core&format=json
retrieved
2 June 2020
page(s)
1-6
1 reference
stated in
Europe PubMed Central
PMCID
5530317
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28327957%20AND%20SRC:MED&resulttype=core&format=json
retrieved
2 June 2020
copyright license
Creative Commons Attribution 4.0 International
start time
24 February 2017
1 reference
stated in
April 2022 Public Data File from Crossref
copyright status
copyrighted
0 references
cites work
Innovations and challenges in detecting long read overlaps: an evaluation of the state-of-the-art
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5530317
retrieved
30 September 2017
A comparison of tools for the simulation of genomic next-generation sequencing data
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5530317
retrieved
30 September 2017
Minimap and miniasm: fast mapping and de novo assembly for noisy long sequences
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5530317
retrieved
30 September 2017
MinION Analysis and Reference Consortium: Phase 1 data release and analysis
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5530317
retrieved
30 September 2017
Oxford Nanopore sequencing, hybrid error correction, and de novo assembly of a eukaryotic genome
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5530317
retrieved
30 September 2017
LINKS: Scalable, alignment-free scaffolding of draft genomes with long reads.
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5530317
retrieved
30 September 2017
A complete bacterial genome assembled de novo using only nanopore sequencing data
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5530317
retrieved
30 September 2017
Improved data analysis for the MinION nanopore sequencer
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5530317
retrieved
30 September 2017
A reference bacterial genome dataset generated on the MinION™ portable single-molecule nanopore sequencer.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5530317
retrieved
30 September 2017
FASTQSim: platform-independent data characterization and in silico read generation for NGS datasets
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5530317
retrieved
30 September 2017
PBSIM: PacBio reads simulator--toward accurate genome assembly
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5530317
retrieved
30 September 2017
Parameters for accurate genome alignment
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5530317
retrieved
30 September 2017
A dot-matrix program with dynamic threshold control suited for genomic DNA and protein sequence analysis.
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5530317
retrieved
29 June 2018
pIRS: Profile-based Illumina pair-end reads simulator
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5530317
retrieved
22 September 2018
Identifiers
DOI
10.1093/GIGASCIENCE/GIX010
1 reference
stated in
Europe PubMed Central
PMCID
5530317
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28327957%20AND%20SRC:MED&resulttype=core&format=json
retrieved
2 June 2020
PMCID
5530317
1 reference
stated in
Europe PubMed Central
PMCID
5530317
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28327957%20AND%20SRC:MED&resulttype=core&format=json
retrieved
2 June 2020
PubMed ID
28327957
1 reference
stated in
Europe PubMed Central
PMCID
5530317
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28327957%20AND%20SRC:MED&resulttype=core&format=json
retrieved
2 June 2020
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