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The RNASeq-er API - a gateway to systematically updated analysis of public RNA-Seq data.
scientific article
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scholarly article
1 reference
stated in
Europe PubMed Central
PMCID
5870697
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28369191%20AND%20SRC:MED&resulttype=core&format=json
retrieved
15 March 2020
title
The RNASeq-er API-a gateway to systematically updated analysis of public RNA-seq data
(English)
1 reference
stated in
Europe PubMed Central
PMCID
5870697
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28369191%20AND%20SRC:MED&resulttype=core&format=json
retrieved
15 March 2020
main subject
RNA sequencing
0 references
RNA analysis
1 reference
based on heuristic
inferred from title
RNA-Seq
1 reference
based on heuristic
inferred from title
author
Robert Petryszak
series ordinal
1
1 reference
stated in
Europe PubMed Central
PMCID
5870697
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28369191%20AND%20SRC:MED&resulttype=core&format=json
retrieved
15 March 2020
Alvis Brazma
series ordinal
7
1 reference
stated in
Europe PubMed Central
PMCID
5870697
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28369191%20AND%20SRC:MED&resulttype=core&format=json
retrieved
15 March 2020
Nuno A. Fonseca
series ordinal
2
1 reference
stated in
Europe PubMed Central
PMCID
5870697
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28369191%20AND%20SRC:MED&resulttype=core&format=json
retrieved
15 March 2020
Anja Füllgrabe
series ordinal
3
1 reference
stated in
Europe PubMed Central
PMCID
5870697
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28369191%20AND%20SRC:MED&resulttype=core&format=json
retrieved
15 March 2020
Maria C Keays
series ordinal
5
1 reference
stated in
Europe PubMed Central
PMCID
5870697
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28369191%20AND%20SRC:MED&resulttype=core&format=json
retrieved
15 March 2020
Amy Y Tang
series ordinal
6
1 reference
stated in
Europe PubMed Central
PMCID
5870697
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28369191%20AND%20SRC:MED&resulttype=core&format=json
retrieved
15 March 2020
author name string
Laura Huerta
series ordinal
4
1 reference
stated in
Europe PubMed Central
PMCID
5870697
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28369191%20AND%20SRC:MED&resulttype=core&format=json
retrieved
15 March 2020
language of work or name
English
0 references
publication date
1 July 2017
1 reference
stated in
Europe PubMed Central
PMCID
5870697
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28369191%20AND%20SRC:MED&resulttype=core&format=json
retrieved
15 March 2020
published in
Bioinformatics
1 reference
stated in
Europe PubMed Central
PMCID
5870697
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28369191%20AND%20SRC:MED&resulttype=core&format=json
retrieved
15 March 2020
volume
33
1 reference
stated in
Europe PubMed Central
PMCID
5870697
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28369191%20AND%20SRC:MED&resulttype=core&format=json
retrieved
15 March 2020
issue
14
1 reference
stated in
Europe PubMed Central
PMCID
5870697
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28369191%20AND%20SRC:MED&resulttype=core&format=json
retrieved
15 March 2020
page(s)
2218-2220
1 reference
stated in
Europe PubMed Central
PMCID
5870697
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28369191%20AND%20SRC:MED&resulttype=core&format=json
retrieved
15 March 2020
copyright license
Creative Commons Attribution 4.0 International
start time
23 March 2017
1 reference
stated in
April 2022 Public Data File from Crossref
copyright status
copyrighted
0 references
cites work
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1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5870697
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2 July 2018
WormBase 2016: expanding to enable helminth genomic research
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2 July 2018
Expression Atlas update--an integrated database of gene and protein expression in humans, animals and plants.
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retrieved
2 July 2018
Content discovery and retrieval services at the European Nucleotide Archive
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5870697
retrieved
2 July 2018
ArrayExpress update--simplifying data submissions
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5870697
retrieved
2 July 2018
Ensembl 2015
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5870697
retrieved
2 July 2018
HTSeq--a Python framework to work with high-throughput sequencing data
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2 July 2018
Expression Atlas update--a database of gene and transcript expression from microarray- and sequencing-based functional genomics experiments
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reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5870697
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2 July 2018
Updates to BioSamples database at European Bioinformatics Institute
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5870697
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2 July 2018
Ensembl Genomes 2013: scaling up access to genome-wide data
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5870697
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2 July 2018
BioServices: a common Python package to access biological Web Services programmatically
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reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5870697
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2 July 2018
TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5870697
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2 July 2018
STAR: ultrafast universal RNA-seq aligner
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5870697
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2 July 2018
Detecting differential usage of exons from RNA-seq data
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5870697
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2 July 2018
Efficient storage of high throughput DNA sequencing data using reference-based compression
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5870697
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2 July 2018
The Sequence Alignment/Map format and SAMtools
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5870697
retrieved
2 July 2018
Identifiers
DOI
10.1093/BIOINFORMATICS/BTX143
1 reference
stated in
Europe PubMed Central
PMCID
5870697
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28369191%20AND%20SRC:MED&resulttype=core&format=json
retrieved
15 March 2020
DBLP publication ID
journals/bioinformatics/PetryszakFFHKTB17
1 reference
stated in
DBLP Dataset 2021-01-02
retrieved
28 January 2021
PMCID
5870697
1 reference
stated in
Europe PubMed Central
PMCID
5870697
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28369191%20AND%20SRC:MED&resulttype=core&format=json
retrieved
15 March 2020
PubMed ID
28369191
1 reference
stated in
Europe PubMed Central
PMCID
5870697
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28369191%20AND%20SRC:MED&resulttype=core&format=json
retrieved
15 March 2020
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