(Q36336528)

13 August 2017

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title

Regulatory network of the initiation of chromosomal replication in Escherichia coli (English)

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13 August 2017

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Jun-ichi Kato

1

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13 August 2017

publication date

1 November 2005

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Critical Reviews in Biochemistry and Molecular Biology

13 August 2017

published in

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13 August 2017

volume

40

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13 August 2017

issue

6

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13 August 2017

page(s)

331-342

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Excess SeqA prolongs sequestration of oriC and delays nucleoid segregation and cell division

13 August 2017

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ATP hydrolysis by ORC catalyzes reiterative Mcm2-7 assembly at a defined origin of replication

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Limiting DNA replication to once and only once

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Binding of SeqA protein to DNA requires interaction between two or more complexes bound to separate hemimethylated GATC sequences

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A case for sliding SeqA tracts at anchored replication forks during Escherichia coli chromosome replication and segregation

21 January 2018

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The Escherichia coli trmE (mnmE) gene, involved in tRNA modification, codes for an evolutionarily conserved GTPase with unusual biochemical properties

21 January 2018

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Controlled initiation of chromosomal replication in Escherichia coli requires functional Hda protein

21 January 2018

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Hda inactivation of DnaA is the predominant mechanism preventing hyperinitiation of Escherichia coli DNA replication

21 January 2018

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Assembly of functionally active Drosophila origin recognition complex from recombinant proteins

21 January 2018

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Expression of Escherichia coli dnaA and mioC genes as a function of growth rate

21 January 2018

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Novel E. coli mutants deficient in biosynthesis of 5-methylaminomethyl-2-thiouridine

21 January 2018

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Temporal regulation of topoisomerase IV activity in E. coli

21 January 2018

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Role of the DNA/membrane complex in prokaryotic DNA replication

21 January 2018

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Lack of SeqA focus formation, specific DNA binding and proper protein multimerization in the Escherichia coli sequestration mutant seqA2.

21 January 2018

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Structural and biochemical analyses of hemimethylated DNA binding by the SeqA protein

21 January 2018

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Reactivation of DnaA by DNA sequence-specific nucleotide exchange in vitro.

21 January 2018

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Reconstitution of licensed replication origins on Xenopus sperm nuclei using purified proteins

21 January 2018

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Sequential binding of SeqA to paired hemi-methylated GATC sequences mediates formation of higher order complexes

21 January 2018

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Initiator (DnaA) protein concentration as a function of growth rate in Escherichia coli and Salmonella typhimurium

21 January 2018

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Metazoan origin selection: origin recognition complex chromatin binding is regulated by CDC6 recruitment and ATP hydrolysis.

21 January 2018

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Cell size and nucleoid organization of engineered Escherichia coli cells with a reduced genome.

21 January 2018

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Cell cycle-dependent duplication and bidirectional migration of SeqA-associated DNA-protein complexes in E. coli

21 January 2018

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DiaA, a novel DnaA-binding protein, ensures the timely initiation of Escherichia coli chromosome replication.

21 January 2018

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Wobble modification differences and subcellular localization of tRNAs in Leishmania tarentolae: implication for tRNA sorting mechanism

21 January 2018

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https://api.crossref.org/works/10.1080%2F10409230500366090

Characterization of Escherichia coli DnaAcos protein in replication systems reconstituted with highly purified proteins

21 January 2018

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https://api.crossref.org/works/10.1080%2F10409230500366090

DnaA protein is sensitive to a soluble factor and is specifically inactivated for initiation of in vitro replication of the Escherichia coli minichromosome.

21 January 2018

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https://api.crossref.org/works/10.1080%2F10409230500366090

The initiator function of DnaA protein is negatively regulated by the sliding clamp of the E. coli chromosomal replicase.

21 January 2018

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https://api.crossref.org/works/10.1080%2F10409230500366090

Feedback controls restrain the initiation of Escherichia coli chromosomal replication.

21 January 2018

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Multiple pathways regulating DnaA function in Escherichia coli: distinct roles for DnaA titration by the datA locus and the regulatory inactivation of DnaA.

21 January 2018

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Hda, a novel DnaA-related protein, regulates the replication cycle in Escherichia coli

21 January 2018

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Formation of an ATP-DnaA-specific initiation complex requires DnaA Arginine 285, a conserved motif in the AAA+ protein family.

21 January 2018

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DNA polymerase III holoenzyme: structure and function of a chromosomal replicating machine

21 January 2018

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Identification of a novel membrane-associated gene product that suppresses toxicity of a TrfA peptide from plasmid RK2 and its relationship to the DnaA host initiation protein

21 January 2018

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https://api.crossref.org/works/10.1080%2F10409230500366090

A novel DnaA protein-binding site at 94.7 min on the Escherichia coli chromosome

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230500366090

Negative control of replication initiation by a novel chromosomal locus exhibiting exceptional affinity for Escherichia coli DnaA protein

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230500366090

Coordinate binding of ATP and origin DNA regulates the ATPase activity of the origin recognition complex

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230500366090

Replication cycle-coordinated change of the adenine nucleotide-bound forms of DnaA protein in Escherichia coli

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230500366090

Interaction of the sliding clamp beta-subunit and Hda, a DnaA-related protein.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230500366090

dam methylation and the initiation of DNA replication on oriC plasmids

21 January 2018

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https://api.crossref.org/works/10.1080%2F10409230500366090

SeqA protein aggregation is necessary for SeqA function

21 January 2018

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Localization of bacterial DNA polymerase: evidence for a factory model of replication

21 January 2018

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Restoration of growth to acidic phospholipid-deficient cells by DnaA(L366K) is independent of its capacity for nucleotide binding and exchange and requires DnaA.

21 January 2018

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SeqA: a negative modulator of replication initiation in E. coli

21 January 2018

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https://api.crossref.org/works/10.1080%2F10409230500366090

Two discriminatory binding sites in the Escherichia coli replication origin are required for DNA strand opening by initiator DnaA-ATP.

21 January 2018

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Perpetuating the double helix: molecular machines at eukaryotic DNA replication origins

21 January 2018

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Regulation of chromosomal replication by DnaA protein availability in Escherichia coli: effects of the datA region

21 January 2018

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https://api.crossref.org/works/10.1080%2F10409230500366090

Deletion of the datA site does not affect once-per-cell-cycle timing but induces rifampin-resistant replication

21 January 2018

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Chromosomal genes essential for stable maintenance of the mini-F plasmid in Escherichia coli.

21 January 2018

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Linear multimer formation of plasmid DNA in Escherichia coli hopE (recD) mutants.

21 January 2018

1 reference

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A nucleotide switch in the Escherichia coli DnaA protein initiates chromosomal replication: evidnece from a mutant DnaA protein defective in regulatory ATP hydrolysis in vitro and in vivo

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230500366090

Clamp loader structure predicts the architecture of DNA polymerase III holoenzyme and RFC.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230500366090

Cell cycle-dependent transcription from the gid and mioC promoters of Escherichia coli

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230500366090

The datA locus predominantly contributes to the initiator titration mechanism in the control of replication initiation in Escherichia coli

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230500366090

The replicative origin of the E. coli chromosome binds to cell membranes only when hemimethylated

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230500366090

Identification and characterization of gyrB mutants of Escherichia coli that are defective in partitioning of mini-F plasmids

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230500366090

Maintenance of plasmids in HU and IHF mutants of Escherichia coli.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230500366090

Conserved arginine residues implicated in ATP hydrolysis, nucleotide-sensing, and inter-subunit interactions in AAA and AAA+ ATPases.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230500366090

Negative control of bacterial DNA replication by a cell cycle regulatory protein that binds at the chromosome origin

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230500366090

DNA topology, not DNA sequence, is a critical determinant for Drosophila ORC-DNA binding

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230500366090

High-affinity binding sites for the initiator protein DnaA on the chromosome of Escherichia coli

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230500366090

Hemimethylation prevents DNA replication in E. coli.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230500366090

Stepwise assembly of initiation proteins at budding yeast replication origins in vitro

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230500366090

ATP activates dnaA protein in initiating replication of plasmids bearing the origin of the E. coli chromosome

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230500366090

Interaction of the initiator protein DnaA of Escherichia coli with its DNA target

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230500366090

High-affinity binding of hemimethylated oriC by Escherichia coli membranes is mediated by a multiprotein system that includes SeqA and a newly identified factor, SeqB

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230500366090

E. coli SeqA protein binds oriC in two different methyl-modulated reactions appropriate to its roles in DNA replication initiation and origin sequestration

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230500366090

ATP- and ADP-dnaA protein, a molecular switch in gene regulation.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230500366090

Mechanism of origin unwinding: sequential binding of DnaA to double- and single-stranded DNA

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230500366090

DNA replication-coupled inactivation of DnaA protein in vitro: a role for DnaA arginine-334 of the AAA+ Box VIII motif in ATP hydrolysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230500366090

Molecular mechanism of DNA replication-coupled inactivation of the initiator protein in Escherichia coli: interaction of DnaA with the sliding clamp-loaded DNA and the sliding clamp-Hda complex.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230500366090

Protein associations in DnaA-ATP hydrolysis mediated by the Hda-replicase clamp complex

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230500366090

Crystal structure of the YgfZ protein from Escherichia coli suggests a folate-dependent regulatory role in one-carbon metabolism.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230500366090

Correlation of gene transcription with the time of initiation of chromosome replication in Escherichia coli.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230500366090

Escherichia coli SeqA protein affects DNA topology and inhibits open complex formation at oriC.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230500366090

Assembly of the human origin recognition complex

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230500366090

SeqA limits DnaA activity in replication from oriC in Escherichia coli.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230500366090

Escherichia coli cell cycle control genes affect chromosome superhelicity

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230500366090

In vivo evidence for the involvement of anionic phospholipids in initiation of DNA replication in Escherichia coli

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230500366090

Mutations in DnaA protein suppress the growth arrest of acidic phospholipid-deficient Escherichia coli cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230500366090

Identification of functional domains of the Escherichia coli SeqA protein

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10409230500366090

10.1080/10409230500366090

21 January 2018

Identifiers

DOI

1 reference

13 August 2017

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