(Q36363637)

13 August 2017

Differential control of the rate of 5'-end-dependent mRNA degradation in Escherichia coli (English)

1 reference

13 August 2017

1 reference

Daniel J Luciano

1

1 reference

13 August 2017

Monica P Hui

2

1 reference

13 August 2017

Atilio Deana

3

1 reference

13 August 2017

Patricia L Foley

4

1 reference

13 August 2017

Kevin J Belasco

5

1 reference

13 August 2017

Joel G Belasco

6

1 reference

13 August 2017

language of work or name

English

0 references

publication date

14 September 2012

1 reference

13 August 2017

Journal of Bacteriology

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13 August 2017

194

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13 August 2017

22

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13 August 2017

6233-6239

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describes a project that uses

13 August 2017

ImageQuant

1 reference

11 June 2022

https://www.ebi.ac.uk/europepmc/webservices/rest/PMC3486407/fullTextXML

inferred from PubMed Central ID database lookup

cites work

Membrane association of PspA depends on activation of the phage-shock-protein response in Yersinia enterocolitica

1 reference

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A mechanistic model of PCR for accurate quantification of quantitative PCR data

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3486407

All things must pass: contrasts and commonalities in eukaryotic and bacterial mRNA decay

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3486407

qpcR: an R package for sigmoidal model selection in quantitative real-time polymerase chain reaction analysis

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3486407

The bacterial enzyme RppH triggers messenger RNA degradation by 5' pyrophosphate removal.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3486407

Initiation of RNA decay in Escherichia coli by 5' pyrophosphate removal

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3486407

Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3486407

Global RNA half-life analysis in Escherichia coli reveals positional patterns of transcript degradation

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3486407

Global analysis of mRNA decay and abundance in Escherichia coli at single-gene resolution using two-color fluorescent DNA microarrays

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3486407

Regions of RNase E important for 5'-end-dependent RNA cleavage and autoregulated synthesis

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3486407

Importance of a 5' stem-loop for longevity of papA mRNA in Escherichia coli.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3486407

RNase G (CafA protein) and RNase E are both required for the 5' maturation of 16S ribosomal RNA.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3486407

Ribonuclease E is a 5'-end-dependent endonuclease

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3486407

A general purpose RNA-cleaving DNA enzyme

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3486407

The ams-1 and rne-3071 temperature-sensitive mutations in the ams gene are in close proximity to each other and cause substitutions within a domain that resembles a product of the Escherichia coli mre locus

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3486407

Cloning and analysis of strong promoters is made possible by the downstream placement of a RNA termination signal

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3486407

The Ams (altered mRNA stability) protein and ribonuclease E are encoded by the same structural gene of Escherichia coli

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3486407

A conditional lethal mutation in an Escherichia coli strain with a longer chemical lifetime of messenger RNA

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3486407

RNase G complementation of rne null mutation identifies functional interrelationships with RNase E in Escherichia coli

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3486407

The CafA protein required for the 5'-maturation of 16 S rRNA is a 5'-end-dependent ribonuclease that has context-dependent broad sequence specificity.

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3486407

A+U content rather than a particular nucleotide order determines the specificity of RNase E cleavage

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3486407

Genetic studies of cleavage-initiated mRNA decay and processing of ribosomal 9S RNA show that the Escherichia coli ams and rne loci are the same

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3486407

Control of RNase E-mediated RNA degradation by 5'-terminal base pairing in E. coli

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3486407

Roles of the 5'-phosphate sensor domain in RNase E.

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3486407

PABLO analysis of RNA: 5'-phosphorylation state and 5'-end mapping

22 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3486407

Structure of Escherichia coli RNase E catalytic domain and implications for RNA turnover.

22 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3486407

Ectopic RNase E sites promote bypass of 5'-end-dependent mRNA decay in Escherichia coli.

22 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3486407

Improved allelic exchange vectors and their use to analyze 987P fimbria gene expression.

22 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3486407

mRNA stabilization by the ompA 5' untranslated region: two protective elements hinder distinct pathways for mRNA degradation.

22 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3486407

RNase E, an endoribonuclease, has a general role in the chemical decay of Escherichia coli mRNA: evidence that rne and ams are the same genetic locus

22 September 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22984254

12 December 2020

inferred from PubMed ID database lookup

The gene specifying RNase E (rne) and a gene affecting mRNA stability (ams) are the same gene

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22984254

12 December 2020

inferred from PubMed ID database lookup

A 5'-terminal stem-loop structure can stabilize mRNA in Escherichia coli

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22984254

12 December 2020

inferred from PubMed ID database lookup

Identifiers

DOI

10.1128/JB.01223-12

1 reference

13 August 2017

1 reference

13 August 2017

PubMed publication ID

22984254

1 reference