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DeepNano: Deep recurrent neural networks for base calling in MinION nanopore reads.
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scholarly article
1 reference
stated in
Europe PubMed Central
PMC publication ID
5459436
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28582401%20AND%20SRC:MED&resulttype=core&format=json
retrieved
22 March 2020
title
DeepNano: Deep recurrent neural networks for base calling in MinION nanopore reads
(English)
1 reference
stated in
Europe PubMed Central
PMC publication ID
5459436
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28582401%20AND%20SRC:MED&resulttype=core&format=json
retrieved
22 March 2020
main subject
deep neural network
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deep learning
0 references
recurrent neural network
1 reference
based on heuristic
inferred from title
author
Tomas Vinar
series ordinal
3
1 reference
stated in
Europe PubMed Central
PMC publication ID
5459436
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28582401%20AND%20SRC:MED&resulttype=core&format=json
retrieved
22 March 2020
Brona Brejova
series ordinal
2
1 reference
stated in
Europe PubMed Central
PMC publication ID
5459436
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28582401%20AND%20SRC:MED&resulttype=core&format=json
retrieved
22 March 2020
author name string
Vladimír Boža
series ordinal
1
1 reference
stated in
Europe PubMed Central
PMC publication ID
5459436
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28582401%20AND%20SRC:MED&resulttype=core&format=json
retrieved
22 March 2020
language of work or name
English
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publication date
5 June 2017
1 reference
stated in
Europe PubMed Central
PMC publication ID
5459436
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28582401%20AND%20SRC:MED&resulttype=core&format=json
retrieved
22 March 2020
published in
PLOS One
1 reference
stated in
Europe PubMed Central
PMC publication ID
5459436
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28582401%20AND%20SRC:MED&resulttype=core&format=json
retrieved
22 March 2020
volume
12
1 reference
stated in
Europe PubMed Central
PMC publication ID
5459436
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28582401%20AND%20SRC:MED&resulttype=core&format=json
retrieved
22 March 2020
issue
6
1 reference
stated in
Europe PubMed Central
PMC publication ID
5459436
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28582401%20AND%20SRC:MED&resulttype=core&format=json
retrieved
22 March 2020
page(s)
e0178751
1 reference
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Europe PubMed Central
PMC publication ID
5459436
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28582401%20AND%20SRC:MED&resulttype=core&format=json
retrieved
22 March 2020
copyright license
Creative Commons Attribution 4.0 International
start time
5 June 2017
1 reference
stated in
April 2022 Public Data File from Crossref
copyright status
copyrighted
0 references
cites work
Detecting DNA cytosine methylation using nanopore sequencing.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5459436
retrieved
30 September 2017
Nanocall: an open source basecaller for Oxford Nanopore sequencing data.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5459436
retrieved
30 September 2017
Real-time selective sequencing using nanopore technology
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5459436
retrieved
30 September 2017
Fast and sensitive mapping of nanopore sequencing reads with GraphMap
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5459436
retrieved
30 September 2017
Real-time, portable genome sequencing for Ebola surveillance
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5459436
retrieved
30 September 2017
Nanopore sequencing detects structural variants in cancer.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5459436
retrieved
30 September 2017
Oxford Nanopore sequencing, hybrid error correction, and de novo assembly of a eukaryotic genome
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5459436
retrieved
30 September 2017
De novo sequencing and variant calling with nanopores using PoreSeq
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5459436
retrieved
30 September 2017
Early insights into the potential of the Oxford Nanopore MinION for the detection of antimicrobial resistance genes
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5459436
retrieved
30 September 2017
A complete bacterial genome assembled de novo using only nanopore sequencing data
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5459436
retrieved
30 September 2017
Rapid draft sequencing and real-time nanopore sequencing in a hospital outbreak of Salmonella
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5459436
retrieved
30 September 2017
Improved data analysis for the MinION nanopore sequencer
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5459436
retrieved
30 September 2017
A first look at the Oxford Nanopore MinION sequencer
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5459436
retrieved
30 September 2017
The Vanishing Gradient Problem During Learning Recurrent Neural Nets and Problem Solutions
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0178751
retrieved
21 January 2018
Identifiers
DOI
10.1371/JOURNAL.PONE.0178751
1 reference
stated in
Europe PubMed Central
PMC publication ID
5459436
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28582401%20AND%20SRC:MED&resulttype=core&format=json
retrieved
22 March 2020
arXiv ID
1603.09195
1 reference
stated in
Unpaywall
PMC publication ID
5459436
1 reference
stated in
Europe PubMed Central
PMC publication ID
5459436
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28582401%20AND%20SRC:MED&resulttype=core&format=json
retrieved
22 March 2020
PubMed publication ID
28582401
1 reference
stated in
Europe PubMed Central
PMC publication ID
5459436
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28582401%20AND%20SRC:MED&resulttype=core&format=json
retrieved
22 March 2020
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