(Q36397739)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22988066%20AND%20SRC:MED&resulttype=core&format=json

13 February 2020

title

Regulation of the H4 tail binding and folding landscapes via Lys-16 acetylation (English)

1 reference

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13 February 2020

2

1 reference

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13 February 2020

author name string

Davit A Potoyan

series ordinal

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22988066%20AND%20SRC:MED&resulttype=core&format=json

13 February 2020

language of work or name

English

0 references

publication date

17 September 2012

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22988066%20AND%20SRC:MED&resulttype=core&format=json

Proceedings of the National Academy of Sciences of the United States of America

13 February 2020

published in

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22988066%20AND%20SRC:MED&resulttype=core&format=json

13 February 2020

volume

109

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22988066%20AND%20SRC:MED&resulttype=core&format=json

13 February 2020

issue

44

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22988066%20AND%20SRC:MED&resulttype=core&format=json

13 February 2020

page(s)

17857-17862

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22988066%20AND%20SRC:MED&resulttype=core&format=json

Single-molecule fluorescence experiments determine protein folding transition path times

13 February 2020

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3497739

Fuzziness: linking regulation to protein dynamics

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3497739

Uncoupled binding and folding of immune signaling-related intrinsically disordered proteins

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3497739

Expanding the proteome: disordered and alternatively folded proteins

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3497739

Acetylation of lysine 120 of p53 endows DNA-binding specificity at effective physiological salt concentration

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3497739

Regulation of chromatin by histone modifications

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3497739

A single-molecule characterization of p53 search on DNA

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3497739

Chromatin higher-order structure and dynamics

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3497739

Experimental snapshots of a protein-DNA binding landscape

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3497739

Understanding protein non-folding.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3497739

Optimized molecular dynamics force fields applied to the helix-coil transition of polypeptides

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3497739

Deconstructing the native state: energy landscapes, function, and dynamics of globular proteins

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3497739

Proteins with weakly funneled energy landscapes challenge the classical structure-function paradigm

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3497739

Fuzzy complexes: polymorphism and structural disorder in protein-protein interactions

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3497739

Functions of site-specific histone acetylation and deacetylation

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3497739

Refinement of the AMBER force field for nucleic acids: improving the description of alpha/gamma conformers

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3497739

Chromatin modifications and their function

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3497739

Histone H4-K16 acetylation controls chromatin structure and protein interactions

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3497739

How do site-specific DNA-binding proteins find their targets?

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3497739

Theory of protein folding

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3497739

Acetylation of p53 augments its site-specific DNA binding both in vitro and in vivo

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3497739

Solvent mediated interactions in the structure of the nucleosome core particle at 1.9 a resolution

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3497739

Conformational dynamics of the chromatin fiber in solution: determinants, mechanisms, and functions

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3497739

Preferential interaction of the core histone tail domains with linker DNA.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3497739

Effects of histone tail domains on the rate of transcriptional elongation through a nucleosome

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3497739

Speeding molecular recognition by using the folding funnel: the fly-casting mechanism

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3497739

The language of covalent histone modifications

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3497739

Coupling of local folding to site-specific binding of proteins to DNA

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3497739

On the magnitude of the electrostatic contribution to ligand-DNA interactions

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3497739

The Energy Landscapes and Motions of Proteins

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3497739

The nature of folded states of globular proteins

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3497739

Dynamics of folded proteins

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3497739

Determination of alkali and halide monovalent ion parameters for use in explicitly solvated biomolecular simulations

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3497739

Energy landscape analyses of disordered histone tails reveal special organization of their conformational dynamics

28 June 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1201805109

The physics and bioinformatics of binding and folding-an energy landscape perspective

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1201805109

Fly-casting in protein-DNA binding: frustration between protein folding and electrostatics facilitates target recognition

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1201805109

The effects of histone H4 tail acetylations on cation-induced chromatin folding and self-association.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1201805109

Positively charged residues in DNA-binding domains of structural proteins follow sequence-specific positions of DNA phosphate groups.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1201805109

Chromatin compaction at the mononucleosome level.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1201805109

Structural variability of nucleosomes detected by single-pair Förster resonance energy transfer: histone acetylation, sequence variation, and salt effects

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1201805109

A new mixing of Hartree–Fock and local density‐functional theories

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1201805109

Gaussian basis sets for use in correlated molecular calculations. I. The atoms boron through neon and hydrogen

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1201805109

Chromatin Fiber Folding: Requirement for the Histone H4 N-terminal Tail

21 January 2018

1 reference

12 December 2020

Acetylation increases the alpha-helical content of the histone tails of the nucleosome

1 reference

12 December 2020

Energy landscape theory, funnels, specificity, and optimal criterion of biomolecular binding

1 reference

12 December 2020

A positive role for histone acetylation in transcription factor access to nucleosomal DNA

1 reference

12 December 2020

Optimized Monte Carlo data analysis

1 reference

12 December 2020

The N tails of histones H3 and H4 adopt a highly structured conformation in the nucleosome

1 reference

12 December 2020

Counterion atmosphere and hydration patterns near a nucleosome core particle

1 reference

12 December 2020

Effects of histone acetylation on the equilibrium accessibility of nucleosomal DNA target sites

1 reference

12 December 2020

Identifiers

DOI

10.1073/PNAS.1201805109

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22988066%20AND%20SRC:MED&resulttype=core&format=json

13 February 2020

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22988066%20AND%20SRC:MED&resulttype=core&format=json

13 February 2020

PubMed publication ID

22988066

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22988066%20AND%20SRC:MED&resulttype=core&format=json